Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4940g00001 ATGTGGGATGAGGTGAATGCTGGACTGAGTGAGCATGGTGCATCCAATGCCTCTAACAACTTGAGCAAAGAGTGTTGGACTGCTGATGAAGACAATTTGGCAGTTGGAGGTCACCTTCAAAGGACGTTGCATGAAGATAGAGATGTGTCCACCGAAATGAAACGCACCTTTGGTCATCCTTGGAAATCACAGCAGCAGCAGTCATTTGATGAGCTGAATCGTAGGCCATGTCCTTCAGAAGGCATTGGATCTGCTCTTGGAAGGTTGCCAAACATTGTGAATTCTTCTAATGTCAAAATGGGAAATCGGCCTTTCTTGTCAAATGCCACATTAGGATCAGTAGGAACAGTGCGACAACAGCAGTCTCATTCTGTAGGAGCAGAGTCTCCTTGGGAGTCACCTTTGCGACAGCAGTCTCCATCACCATCAGTCAATGTGCCCCATCCTCATGAAATGCAGATCTTGGCAGAGCAAGACCATCCACAGACTCTTAAAACGTCTCAATTTTCAGGACGTTTACGGAGCCAAGATATTCGAGATTCATCATCTGTCCTTCCACGTAATGTTCAGGCTGGTAACTCTCAGAGATCACATCAAAAAGACTTGCAAGGTCCATTGTCTTCAGTGTCTACTTTTCAGCCACGACATCATAGTGCAGCTTCACAGCCACAGGATCTTGGTTCCAATAGTGAAGTGCCTGAGATGAAGGGAAAGATGACCCACTCTAAAGAAACTTCAGAGCAGTCAACTACAAGTTCTATGTTAGCTGCAGTTATGAAGAGTGGAATTTTTACAAGTGGTCAGCATGGCATAAGTTTCTTGGATAGGAGGAACCTTCCATCAAAGTCCGGGGTTCAGCCTGCCCGGCCAAGTGGATCATCTCCTACAACATCAGTTTCTTCAGGGCCTGGGGTTGCGTCTCCATCTCGATTAGGTCCTTCTAATGATGGCCTATCTACTCTGTCAAAAGAATCTCAAGGAAAGGTTGGAGCCCCATCAAGGCTGCCTGCGCTCCCACCAGCTTCCTCTACTGTGAGTAGTGCCTCAGCCAAGACATCAAGTGCCACTAATAATAAATCTGATCCAGTTTCAAACCTTTTAAACTCATTAGTTGCAAAGGGTTTGATTTCTGCAAAAACAGATTCATCTACTGAGGTGCCAGCTGAGGTGCTGATTCGATTGGAAGATCAGAGCCAAAGCATCACCACCAGTGGCACCTTGCCAGCTGTTTCAGTTACTGGTTCTGAAACTGTTCCTGTCATATCTACCGGAGATGATCAGCCTGCAAAAGGTTCCTCCAGCCAATCAACCCCTACAGAAATAAAAAATCTAATTGGCTTTGAGTTTAAGCCCAGTGTGATCCGGGAATTGCATTTACCTGTGATCAGAGAACTATTGGATGATTTCCCTCATCATTGCAGTATTTGTGGCCTTAGGCTTAAACATCAAGAACAATTTAATAGACACTTGGAGTGGCATGCTATGAGAGAAAGAGAACAAAATGATATATTGAAGGCCTCAAGGAGATGGTATTTGAGATCAAGTGACTGGGTTGATGGCAAGGATGAAGTTTCATCTGAGTATGAGGGTATTGATTCCATAGATTTACATGGCAATAAATCAAACAGAAGTGAAGAGGATGCTATGGCTCCATCTGATGAAGATCAGTGCTTATGTATGCTGTGTGGTGAGCTATTTGAAGATGTTTATTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGGGCGGTTTACCTACCTGTCTCCAGTAGTGATAGTGAGACGGATACTAACATCAGTAGTGAAAGGGGCCCCATTGTTCACACTTGGTGCTTATCAGAGAGCTCCATATCTAACGTTCTTGCAAAGGAACAGGATTAG 1878 0.4462 MWDEVNAGLSEHGASNASNNLSKECWTADEDNLAVGGHLQRTLHEDRDVSTEMKRTFGHPWKSQQQQSFDELNRRPCPSEGIGSALGRLPNIVNSSNVKMGNRPFLSNATLGSVGTVRQQQSHSVGAESPWESPLRQQSPSPSVNVPHPHEMQILAEQDHPQTLKTSQFSGRLRSQDIRDSSSVLPRNVQAGNSQRSHQKDLQGPLSSVSTFQPRHHSAASQPQDLGSNSEVPEMKGKMTHSKETSEQSTTSSMLAAVMKSGIFTSGQHGISFLDRRNLPSKSGVQPARPSGSSPTTSVSSGPGVASPSRLGPSNDGLSTLSKESQGKVGAPSRLPALPPASSTVSSASAKTSSATNNKSDPVSNLLNSLVAKGLISAKTDSSTEVPAEVLIRLEDQSQSITTSGTLPAVSVTGSETVPVISTGDDQPAKGSSSQSTPTEIKNLIGFEFKPSVIRELHLPVIRELLDDFPHHCSICGLRLKHQEQFNRHLEWHAMREREQNDILKASRRWYLRSSDWVDGKDEVSSEYEGIDSIDLHGNKSNRSEEDAMAPSDEDQCLCMLCGELFEDVYCQERDEWMFKGAVYLPVSSSDSETDTNISSERGPIVHTWCLSESSISNVLAKEQD 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4940g00001 625 MobiDBLite consensus disorder prediction 116 146 - -
Pral4940g00001 625 MobiDBLite consensus disorder prediction 274 364 - -
Pral4940g00001 625 MobiDBLite consensus disorder prediction 339 364 - -
Pral4940g00001 625 MobiDBLite consensus disorder prediction 116 148 - -
Pral4940g00001 625 MobiDBLite consensus disorder prediction 167 229 - -
Pral4940g00001 625 MobiDBLite consensus disorder prediction 167 252 - -
Pral4940g00001 625 ProSitePatterns Zinc finger C2H2 type domain signature. 473 493 IPR013087 -
Pral4940g00001 625 MobiDBLite consensus disorder prediction 418 438 - -
Pral4940g00001 625 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 1 617 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pral4940g00001 625 MobiDBLite consensus disorder prediction 284 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4940g00001 Pral-Chr4940 121 4445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4940g00001 408 615 C2H2 Transcription Factor Family AT4G04885 33.043 8.52e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4940g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4940g00001 K14400 - gmx:100788958 488.419