Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4939g00025 ATGATATCTTCTGGGGTTAACTTGGTGATGACTGTGATTGGATTTGTGGTGAGCACTATGTTTATCGTTTTCGTTTGCACTAGACTCATCTGTGCTCGAATTCACTTAAATGCTTCTCGCCGATCCCTCCTTGTTGCTTCCAGATCCAATCTCAGTCTGCTGGAGCGAGGATTTCATGGTCTTGAACCCATAGCAGTAGCGAATTTCCCAACGAAGAAGTACAGTGATGGATGCTTTGCTGCTGCAGAAAATTCTCAATGCACAGTTTGTCTATCGGAATACCAAGGTGAGGATGTACTACGCATCCTCCCGTATTGTGGACACTTCTTCCATGCAACCTGCATAGACCTATGGCTGCAGCAACATTCAACATGCCCAGTTTGTCGAATCTCATTGCGCAAATCATCCGAGAGGAAACGCATAATGCAACCATTGTTCAGTGCTGTTGTTCGATCCAATTTTGGTGTGGAATCTATCGAGGCTTATCCTTATCACTGTATGATGTCTAATAATGAGTTATCATCAAGAAATTCTGATATACAAGAGGATCATTGCGCAGCTGAAGGTGGTGGAACGGTTGCTATAGAGAATGTCACCAATTTAAGTGATGTTGATCAGTCCATGAAAGATGCAGAAAAGAAGCATTTAGAGAGCCCATCAATCCCTTTAAGCTAA 675 0.4296 MISSGVNLVMTVIGFVVSTMFIVFVCTRLICARIHLNASRRSLLVASRSNLSLLERGFHGLEPIAVANFPTKKYSDGCFAAAENSQCTVCLSEYQGEDVLRILPYCGHFFHATCIDLWLQQHSTCPVCRISLRKSSERKRIMQPLFSAVVRSNFGVESIEAYPYHCMMSNNELSSRNSDIQEDHCAAEGGGTVAIENVTNLSDVDQSMKDAEKKHLESPSIPLS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4939g00025 224 FunFam E3 ubiquitin-protein ligase ATL6 50 135 - -
Pral4939g00025 224 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Pral4939g00025 224 Pfam Ring finger domain 86 129 IPR001841 -
Pral4939g00025 224 CDD RING-H2_EL5-like 86 129 - -
Pral4939g00025 224 SUPERFAMILY RING/U-box 81 134 - -
Pral4939g00025 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 135 IPR013083 -
Pral4939g00025 224 SMART ring_2 87 128 IPR001841 -
Pral4939g00025 224 PANTHER OS11G0150450 PROTEIN 1 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4939g00025 Pral-Chr4939 170870 173529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4939g00025 13 218 C3H Transcription Factor Family AT4G10150 30.000 1.56e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4939g00025 - - pcin:129309455 367.466