Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4938g00006 ATGTATTGCAATTTTCTGGAGCATGCAGCAGAGTATGTGAAGCAGGCGGTTCATGAGGATGATGCTGGAAACTATAAGAAGGCATTTACTCTTTATATGAATGCATTGGAATACCTAAAGACCCATTTGAAGTATGAGAAGAACCCCAGGATCAAGGAAACAATAACCGAGAAATTTGTTCAATACTTGAGGAGGGCAGAGGAGATACGTGCCATTCTTGATAAAGGAGAAAGTGGGCCTAACTTGTCTGGTGGTGCAGCTCAATCTAATGTTGTGAGACCAAATACAAAGCCAAAGAGTGGGGAAGCTGGAGATAAAGATGATCCAGAGAAAGCAAAGCTGAAGGCTGGTCTTGATTCTGTAATAATCAGAGAGAAACCAAATGTCAAATGGAGTGATGTTGCTGGGCTTGAGAATGCCAAACAAGCATTACAAGAAGCCGTAATATTGCCTGTTAAGTTCCCTCAATTTTTTACCGGGAAGAGACAACCATGGAGAGCATTTCTTTTGTATGGTCCCCCTGGAACAGGGAAGTCATATTTAGCAAAGGCTGTAGCTACAGAAGCAGACTCAACATTCTTCAGTGTTTCATCATCAGATCTAGTCTCTAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCTAGTCTTTTCCAAATGGCTCGTGAAAGTGCTCCTTCAATTATTTTTATTGATGAGATAGATTCTTTATGTGGCCAACGAGGTGAAGGCAATGAAAGTGAGGCGTCTAGACGCATCAAAACTGAACTTCTCGTACAAATGCAGGGTACAGGTAAAGAAGATCATAAAGTTCTCATTCTTGCTGCCACCAATACTCCTTATGCTCTGGATCAGGCCATCCGACGACGTTTTGACAAGCGAATCTACATACCTCTCCCAGACATGAAGGCCAGGCAGCATATGTTTAAGGTGCATCTTGGAGATACCCCGCATAACTTAACTGAAAAAGATTTTGAGGAATTGGCTCACAAAACTGATGGATTTTCTGGTTCAGACATTTCCGTTTGTGTTAAGGATGTACTTTTTGAACCAGTTCGTAAGACCAGGGATTCCAAGTTCTTTAGGAAAACCTCCAGGGGAAAGTGGATCCCTTGCGAGCCTACTGAAAAAGGCGCTGTTAACATTACCCTGCTAGAACTTGATGCGCAAGGCCTTGCTTCAGAGATTGTGCCACCACCGATAACAAGGGAAGATTTTGATAAAGTATTAAGGAGGCAGAAGCCAACAGTAAGTAAAGCTGATCTTGAGGTGCATGAGAGATTTACCCAAGAGTTTGGAGAGGAGGGTTGA 1308 0.4258 MYCNFLEHAAEYVKQAVHEDDAGNYKKAFTLYMNALEYLKTHLKYEKNPRIKETITEKFVQYLRRAEEIRAILDKGESGPNLSGGAAQSNVVRPNTKPKSGEAGDKDDPEKAKLKAGLDSVIIREKPNVKWSDVAGLENAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGTGKEDHKVLILAATNTPYALDQAIRRRFDKRIYIPLPDMKARQHMFKVHLGDTPHNLTEKDFEELAHKTDGFSGSDISVCVKDVLFEPVRKTRDSKFFRKTSRGKWIPCEPTEKGAVNITLLELDAQGLASEIVPPPITREDFDKVLRRQKPTVSKADLEVHERFTQEFGEEG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4938g00006 435 FunFam Vacuolar protein sorting-associated protein 4 127 307 - -
Pral4938g00006 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 431 IPR027417 -
Pral4938g00006 435 SUPERFAMILY MIT domain 3 91 IPR036181 -
Pral4938g00006 435 PANTHER AAA DOMAIN-CONTAINING 23 433 - -
Pral4938g00006 435 Pfam ATPase family associated with various cellular activities (AAA) 169 298 IPR003959 GO:0005524|GO:0016887
Pral4938g00006 435 CDD RecA-like_VPS4 126 296 - -
Pral4938g00006 435 MobiDBLite consensus disorder prediction 80 112 - -
Pral4938g00006 435 CDD MIT_VPS4 4 78 IPR045253 -
Pral4938g00006 435 ProSitePatterns AAA-protein family signature. 270 289 IPR003960 GO:0005524|GO:0016887
Pral4938g00006 435 Gene3D - 4 75 - -
Pral4938g00006 435 MobiDBLite consensus disorder prediction 82 96 - -
Pral4938g00006 435 Gene3D - 127 423 IPR027417 -
Pral4938g00006 435 SMART AAA_5 164 300 IPR003593 GO:0016887
Pral4938g00006 435 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Pral4938g00006 435 SMART smart 2 80 IPR007330 -
Pral4938g00006 435 Gene3D - 300 415 - -
Pral4938g00006 435 Pfam Vps4 C terminal oligomerisation domain 368 432 IPR015415 -
Pral4938g00006 435 FunFam vacuolar protein sorting-associated protein 4A 300 415 - -
Pral4938g00006 435 Pfam MIT (microtubule interacting and transport) domain 6 70 IPR007330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4938g00006 Pral-Chr4938 42624 47160 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4938g00006 163 356 Calmodulin-binding Proteins AT3G56690 36.224 6.19e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4938g00006 K12196 - csav:115706151 727.628