LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4938g00004	ATGTATTGCAATTTTCTGGAGCATGCAGCAGAGTATGTGAAGCAGGCGGTTCATGAGGATGATGCTGGAAACTATAAGAAGGCATTTACTCTTTATATGAATGCATTGGAATACCTAAAGACCCATTTGAAGTATGAGAAGAACCCCAGGATCAAGGAAACAATAACCGAGAAATTTGTTCAATACTTGAGGAGGGCAGAGGAGATACGTGCCATTCTTGATAAAGGAGAAAGTGGGCCTAACTTGTCTGGTGGTGCAGCTCAATCTAATGTTGTGAGACCAAATACAAAGCCAAAGAGTGGGGAAGCTGGAGATAAAGATGATCCAGAGAAAGCAAAGCTGAAGGCTGGTCTTGATTCTGTAATAATCAGAGAGAAACCAAATGTCAAATGGAGTGATGTTGCTGGGCTTGAGAATGCCAAACAAGCATTACAAGAAGCCGTAATATTGCCTGTTAAGTTCCCTCAATTTTTTACCGGGAAGAGACAACCATGGAGAGCATTTCTTTTGTATGGTCCCCCTGGAACAGGGAAGTCATATTTAGCAAAGGCTGTAGCTACAGAAGCAGACTCAACATTCTTCAGTGTTTCATCATCAGATCTAGTCTCTAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCTAGTCTTTTCCAAATGGCTCGTGAAAGTGCTCCTTCAATTATTTTTATTGATGAGATAGATTCTTTATGTGGCCAACGAGGTGAAGGCAATGAAAGTGAGGCGTCTAGACGCATCAAAACTGAACTTCTCGTACAAATGCAGGGTACAGGTAAAGAAGATCATAAAGTTCTCATTCTTGCTGCCACCAATACTCCTTATGCTCTGGATCAGGCCATCCGACGACGTTTTGACAAGCGAATCTACATACCTCTCCCAGACATGAAGGCCAGGCAGCATATGTTTAAGGTGCATCTTGGAGATACCCCACATAACTTAAAAAGATTTTGA	969	0.419	MYCNFLEHAAEYVKQAVHEDDAGNYKKAFTLYMNALEYLKTHLKYEKNPRIKETITEKFVQYLRRAEEIRAILDKGESGPNLSGGAAQSNVVRPNTKPKSGEAGDKDDPEKAKLKAGLDSVIIREKPNVKWSDVAGLENAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGTGKEDHKVLILAATNTPYALDQAIRRRFDKRIYIPLPDMKARQHMFKVHLGDTPHNLKRF	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4938g00004	322	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	122	317	IPR027417	-
	Pral4938g00004	322	CDD	RecA-like_VPS4	126	296	-	-
	Pral4938g00004	322	MobiDBLite	consensus disorder prediction	80	112	-	-
	Pral4938g00004	322	CDD	MIT_VPS4	4	78	IPR045253	-
	Pral4938g00004	322	FunFam	Vacuolar protein sorting-associated protein 4	127	307	-	-
	Pral4938g00004	322	ProSitePatterns	AAA-protein family signature.	270	289	IPR003960	GO:0005524\|GO:0016887
	Pral4938g00004	322	FunFam	Suppressor of K+ transport growth defect 1	6	75	-	-
	Pral4938g00004	322	MobiDBLite	consensus disorder prediction	82	96	-	-
	Pral4938g00004	322	SMART	AAA_5	164	300	IPR003593	GO:0016887
	Pral4938g00004	322	SMART	smart	2	80	IPR007330	-
	Pral4938g00004	322	Gene3D	-	127	299	IPR027417	-
	Pral4938g00004	322	PANTHER	AAA DOMAIN-CONTAINING	23	319	-	-
	Pral4938g00004	322	SUPERFAMILY	MIT domain	3	91	IPR036181	-
	Pral4938g00004	322	Gene3D	-	300	320	-	-
	Pral4938g00004	322	Pfam	ATPase family associated with various cellular activities (AAA)	169	298	IPR003959	GO:0005524\|GO:0016887
	Pral4938g00004	322	Gene3D	-	4	75	-	-
	Pral4938g00004	322	Pfam	MIT (microtubule interacting and transport) domain	6	70	IPR007330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4938g00004	Pral-Chr4938	30464	47163	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4938g00004	163	319	Calmodulin-binding Proteins	AT3G56690	37.107	5.60e-29	115

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4938g00004	K12196		-	mof:131148553	548.51