Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4938g00003 ATGGATGTTCTATCGATTTCGCCTACGTTAAATGAACATATAGCCTTTTCCATTCTCAAACCTCATAGATTCCAACTTCGCCACCTTCCCTTAAACGCCAGATTGCGCAATTCATCAAACAACGCAACCCATTTCAAGCTTTCTTCTTCCTCCAGTTTCTGTTATGGAATAGCGGCAACTTCAGCAACTACTTACACTCCCTTAGCTTCTTCCACCACTGAGAATCGCCATTGGATAGTAATCATGGAAAAGCCTCCACAAGGGGTAGATTCCAAGCAGAAAGTAATTGATTATTATGTAAAAACTCTTCAAAGAGTTATTGGCAGTGAGGAAGACGCTCAAATGTGTATTTACGATGCTTCTTGGGATGCCCACTACGGTTTTTGTTGTGATATCGATGAAGAAACTTCTTCCCAGCTCGCTCGTTTACCTGGGGTCATTTCAGTTAAGCCTGATCCAGATTTCAGCTCTCTGGAAAAGGATTATATTTATAGGTCATCAAATAGCCAGGCAGATAATTTGTCAAAGCTACAAACTGGAGTCACTTTGTTGTTCCCTGCTGGGAATTCAAAGCATTGGCTTGTTCGAATGGATAAACCTGGGGTTGGTGTTGTTACGAAGGCCCAAATCGTGGATTATTATGCTCAAATTCTAACCAAAGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATACCATGTTTCTTGGAAATCCAACTTTGGCTTTTGCTGTGAACTTGATGAGGATTGTGCACGAGAGCTAGCTGGCGTCTCTGGTGTCTTATCGGTTCAGCCGGACAATAATTTTGAGTCAGAAATTAAAGATTATGGAGGTGTGAACTTAGGAAACAGTTTGAATGTGCTGAACTCTTCTGAAGCAAGTGAGGCAGCTCCTTTGAAGACAAAAAAGCTTTTTGTGACAGGCCTATCATTTTATACATCTGAGAAGACCTTACGTGCAGCATTTGAAGGCTTTGGTGATCTTGTTGAAGTTAAAGTTATTATGGATAAAATTTCTAAAAGGTCCAAGGGCTATGCATTTGTGGAATACACAACAGAGGAGGCGGCAGCTGCGGCATTGAAAGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTTGTGGATGTTGCCAAACCTAGCCGACCAAAATATAATGGGGGTCGTGCCAGACCTGGAGCCTGA 1188 0.4184 MDVLSISPTLNEHIAFSILKPHRFQLRHLPLNARLRNSSNNATHFKLSSSSSFCYGIAATSATTYTPLASSTTENRHWIVIMEKPPQGVDSKQKVIDYYVKTLQRVIGSEEDAQMCIYDASWDAHYGFCCDIDEETSSQLARLPGVISVKPDPDFSSLEKDYIYRSSNSQADNLSKLQTGVTLLFPAGNSKHWLVRMDKPGVGVVTKAQIVDYYAQILTKVMGNEKDAQMCIYHVSWKSNFGFCCELDEDCARELAGVSGVLSVQPDNNFESEIKDYGGVNLGNSLNVLNSSEASEAAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGDLVEVKVIMDKISKRSKGYAFVEYTTEEAAAAALKEMNGKIINGWMIVVDVAKPSRPKYNGGRARPGA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4938g00003 395 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 181 372 IPR039206 GO:0016554
Pral4938g00003 395 SUPERFAMILY RNA-binding domain, RBD 293 393 IPR035979 GO:0003676
Pral4938g00003 395 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 381 IPR000504 GO:0003723
Pral4938g00003 395 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 371 IPR000504 GO:0003723
Pral4938g00003 395 Gene3D - 286 395 IPR012677 -
Pral4938g00003 395 FunFam Organelle RRM domain-containing protein 1, chloroplastic 181 270 - -
Pral4938g00003 395 SMART rrm1_1 304 377 IPR000504 GO:0003723
Pral4938g00003 395 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 186 271 IPR037045 -
Pral4938g00003 395 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 59 156 IPR037045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4938g00003 Pral-Chr4938 24203 28840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4938g00003 300 393 C2H2 Transcription Factor Family AT2G19380 33.333 5.41e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4938g00003 - - qsa:O6P43_004903 545.814