Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4937g00002 ATGAAAAAAGTACGTGAACTTAGCATCCTTTGTGATGTTGAGGCTGGGGCAATCGTTTTCAATGGCCCCTCTGATCCTCAACCAGAGGTTTGGCCGGACCATGAAGGTGTCCAGCAAGTGATTGAGAGGTGCCAAGCTAAGCAGAACAACTTGAACGGGGAGGAATCGATACAGAAGAGGATTAACAAAGGGAAAGAACTTCTGATGAGAAGAAGAGAAGAAAACCATAGAGAGGAGATTTCCCAACTTATGATCCTCTGTATGGCAGGGAAAACAATGCCCTCCCAAAAAGATTGGCCTGATATGAAGATGTTAGCGGAGCAGACTTTGAAGAACATAAACTGGACTGAGCAAGAATCTGCCAAAGAAAATGAAAATCTTACTGACCAACATCTGCAGCATGGCATGGACATAGGAAATATGGAAGGTTATATGGGAATTGATGCATGTGAGATGCCACAACCACCATCTAAAATTGCCAATTACCTATATGTTCCATCGTTTTACAACCCATTTTCTCCATGA 525 0.4286 MKKVRELSILCDVEAGAIVFNGPSDPQPEVWPDHEGVQQVIERCQAKQNNLNGEESIQKRINKGKELLMRRREENHREEISQLMILCMAGKTMPSQKDWPDMKMLAEQTLKNINWTEQESAKENENLTDQHLQHGMDIGNMEGYMGIDACEMPQPPSKIANYLYVPSFYNPFSP 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4937g00002 174 Gene3D - 1 66 IPR036879 GO:0003677|GO:0046983
Pral4937g00002 174 ProSiteProfiles MADS-box domain profile. 1 21 IPR002100 GO:0003677|GO:0046983
Pral4937g00002 174 SUPERFAMILY SRF-like 1 47 IPR036879 GO:0003677|GO:0046983
Pral4937g00002 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 1 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4937g00002 Pral-Chr4937 10147 10752 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4937g00002 2 114 Type I MADS-box Gene Family AT1G65300 36.134 8.69e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4937g00002 SRF-TF 3.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4937g00002 - - pcin:129319512 182.57