Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4935g00005 ATGTCTGTAATCGAGACCCCGACCGTCGATTGCGTTCATCAGCGCGGCGGAGGTGGTGCCGATCACCACCGTACCTCAACCAAACGTAAATTTGATGATTTCACGGCAGCCTTCAACTATGACGGGGAAAACTTTTCTGATTTTTGCGACTCATGCGACTTGGTATCGGTAAGAATGAGGAAAGACGAACCTAAAGCCCAAAATTTTTGCAATTCGGAAACTTTTAACGGGTCTCTCTTAGATGTTGTTGGTACTGGGGTATCGGGCACAGCCCCGTACGCTTGTTCGTCCCGGTCCGAGTCGACCCGGCCATGGTCGAGGTTGCAATTTTTCATTCGATTGATGTCAGAAGCAAAAACTATGGTACTTGAAGCTTGTCCACAAGATACAGTAAAATCGATTCATGAACGTATCCAAGCAATTACGGGCATTCCGCTGTTTGAACAGAGACTGATATATATGGGTAAACAGCTTCAGTGGGAACAGACTCTGGTCGAGTGTGCAATTGAGAGAGATTGTTCGCTTCAATTGGTTGGGCGCATGCGCAGCACTGAACATCCTCAAGCTTGGCAGGTAATCAACGATATGGTTTCTCTAATTTGGCGTCTCTGCAGGGGTGAAGTGGAACATGATGCCTTGAAAATGATCAAAGCCCTCATGACTGATTATTTACAAATGACTTCTAGAATTGATAACGATGCAGCTTCTGGGTATTTCCAGATATTTTTGTCTTCATCTGCCGCTGCTATGCTAGTTATGCTCTATATGTCACCCTATGTAGGTAACAAAGAATGTGGTGATTGCTCAATTAGGCATTTTTTGAGTTCCTGTCGCAGTACCTTGTCTAAATCATTGCATACTACGTGTGCGCGTGTAGTGCTGGAGTTTTGCAAATTACTTAGAAGGGCAGGTCCTGAGGATCCTTTATATCTCTCATGTCGGAGCACCTTTGGGTCTTTTTTGGAGACTGCTATCATTGCCTATGTTTCTGAGAATGAAAAGGATTTGAGCGAAAAGCAGTTGATTTTAATTGAAGATATTCTCCCTTTTGTTCGGGAGATTGCAAACAGACTGTTGAGGGCTTTGGATATGAGTATGGAATCCCCCACTAGTGGAGGGCCATCGGTGGTTGATGTTCGAGATTTTACTGCATTCTTACTGCCCTTAAGAACTAGAATCAGCGAGCCACTAGCTTTCAAGAGTCTACATTCTTCCAAGTCTGATGAAAAACTAAATAAGCTCCTGTTACTGGATGATATTCATCTTATATTTAATGAATTATTACAAAAAATGGATCAGTGCCTAAATAAAATGCAGGAAATTTTGGCTGCCAAGGAACGAGATGAGGGACATAATTTTTATTCAGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTATCACCTCTCTAAGCTCTATGATGGAGCTGAAGAGGAATTTTGGTGGGTTTTGAGACGTCAGAGAAGCATGCTGGTTCTACTTATCACCCAATATGCAAAGAGAACTGATGATCATCAGTGGATTCTGGAACACAAGTGCGTAACGAATTTCGAATGCAGAAGGCATTTGGTGATGATGATGTTCCCAGATGTAAAAGAGGACTATGAGGAATTGCATGAGATGCTCATTGACCGGTCTCAGCTGTTGGCAGAATCATTTGAATATATAGGACGGGCAGAGCCTGAATCTCTACATGCTGGTCTTTTTATGGAATTCAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGAGAGTGGTTTTTCTTGGTATGCCAAGCTTTATTTAATCCACAAAATGCTCTTTTTGTGGCGTGCCCAAATGACCAGAGGAGATTTCTTCCCAATCCTGCATCCAAGGTACATCCTCTGCACCTTGATTACTTCACCTTCTCTGGTCGAGTTATTGCATTAGCTTTAATGCATAGGGTGCAAGTGGGCATCGTTTTGGATCGTGTGTTTTTCATGCAATTGGCTGGAACGTATATTACTTTAGAAGATATACAGGATGCTGATCCATATTTGTACGGTAGCTGCAAGCAAATACTGGAGATGGATGCTGATTTCATTGATTCAGATGCTTTAGGGCTGACCTTTGTTAGAGAGGTGGAGGAATTAGGACACATGAAAGTGGTTGAGCTTTGCCCAGGTGTCACATTTTGCCCAAGGTTTTGCTGA 2178 0.4298 MSVIETPTVDCVHQRGGGGADHHRTSTKRKFDDFTAAFNYDGENFSDFCDSCDLVSVRMRKDEPKAQNFCNSETFNGSLLDVVGTGVSGTAPYACSSRSESTRPWSRLQFFIRLMSEAKTMVLEACPQDTVKSIHERIQAITGIPLFEQRLIYMGKQLQWEQTLVECAIERDCSLQLVGRMRSTEHPQAWQVINDMVSLIWRLCRGEVEHDALKMIKALMTDYLQMTSRIDNDAASGYFQIFLSSSAAAMLVMLYMSPYVGNKECGDCSIRHFLSSCRSTLSKSLHTTCARVVLEFCKLLRRAGPEDPLYLSCRSTFGSFLETAIIAYVSENEKDLSEKQLILIEDILPFVREIANRLLRALDMSMESPTSGGPSVVDVRDFTAFLLPLRTRISEPLAFKSLHSSKSDEKLNKLLLLDDIHLIFNELLQKMDQCLNKMQEILAAKERDEGHNFYSAWSQYLSILKELYHLSKLYDGAEEEFWWVLRRQRSMLVLLITQYAKRTDDHQWILEHKCVTNFECRRHLVMMMFPDVKEDYEELHEMLIDRSQLLAESFEYIGRAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQALFNPQNALFVACPNDQRRFLPNPASKVHPLHLDYFTFSGRVIALALMHRVQVGIVLDRVFFMQLAGTYITLEDIQDADPYLYGSCKQILEMDADFIDSDALGLTFVREVEELGHMKVVELCPGVTFCPRFC 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4935g00005 725 PRINTS Ubiquitin signature 119 139 IPR019956 -
Pral4935g00005 725 PRINTS Ubiquitin signature 140 160 IPR019956 -
Pral4935g00005 725 PRINTS Ubiquitin signature 161 182 IPR019956 -
Pral4935g00005 725 ProSiteProfiles Ubiquitin domain profile. 108 184 IPR000626 GO:0005515
Pral4935g00005 725 SUPERFAMILY Ubiquitin-like 109 196 IPR029071 -
Pral4935g00005 725 SMART ubq_7 108 180 IPR000626 GO:0005515
Pral4935g00005 725 Pfam Ubiquitin family 111 182 IPR000626 GO:0005515
Pral4935g00005 725 SUPERFAMILY Hect, E3 ligase catalytic domain 536 717 IPR035983 GO:0004842
Pral4935g00005 725 Pfam HECT-domain (ubiquitin-transferase) 590 717 IPR000569 GO:0004842
Pral4935g00005 725 Gene3D Hect, E3 ligase catalytic domains 543 660 - -
Pral4935g00005 725 Gene3D Hect, E3 ligase catalytic domain 661 717 - -
Pral4935g00005 725 ProSiteProfiles HECT domain profile. 561 717 IPR000569 GO:0004842
Pral4935g00005 725 Gene3D - 103 196 - -
Pral4935g00005 725 SMART hect_3 559 725 IPR000569 GO:0004842
Pral4935g00005 725 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 109 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4935g00005 Pral-Chr4935 76919 92193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4935g00005 108 182 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 1.15e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4935g00005 - - gmx:100789233 947.192