LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4935g00004	ATGTCTGTAATCGAGACCCCGACCGTCGATTGCGTTCATCAGCGCGGCGGAGGTGGTGCCGATCACCACCGTACCTCAACCAAACGTAAATTTGATGATTTCACGGCAGCCTTCAACTATGACGGGGAAAACTTTTCTGATTTTTGCGACTCATGCGACTTGGTATCGGTAAGAATGAGGAAAGACGAACCTAAAGCCCAAAATTTTTGCAATTCGGAAACTTTTAACGGGTCTCTCTTAGATGTTGTTGGTACTGGGGTATCGGGCACAGCCCCGTACGCTTGTTCGTCCCGGTCCGAGTCGACCCGGCCATGGTCGAGGTTGCAATTTTTCATTCGATTGATGTCAGAAGCAAAAACTATGGTACTTGAAGCTTGTCCACAAGATACAGTAAAATCGATTCATGAACGTATCCAAGCAATTACGGGCATTCCGCTGTTTGAACAGAGACTGATATATATGGGTAAACAGCTTCAGTGGGAACAGACTCTGGTCGAGTGTGCAATTGAGAGAGATTGTTCGCTTCAATTGGTTGGGCGCATGCGCAGCACTGAACATCCTCAAGCTTGGCAGGTAATCAACGATATGGTTTCTCTAATTTGGCGTCTCTGCAGGGGTGAAGTGGAACATGATGCCTTGAAAATGATCAAAGCCCTCATGACTGATTATTTACAAATGACTTCTAGAATTGATAACGATGCAGCTTCTGGGTATTTCCAGATATTTTTGTCTTCATCTGCCGCTGCTATGCTAGTTATGCTCTATATGTCACCCTATGTAGGTAACAAAGAATGTGGTGATTGCTCAATTAGGCATTTTTTGAGTTCCTGTCGCAGTACCTTGTCTAAATCATTGCATACTACGTGTGCGCGTGTAGTGCTGGAGTTTTGCAAATTACTTAGAAGGGCAGGTCCTGAGGATCCTTTATATCTCTCATGTCGGAGCACCTTTGGGTCTTTTTTGGAGACTGCTATCATTGCCTATGTTTCTGAGAATGAAAAGGATTTGAGCGAAAAGCAGTTGATTTTAATTGAAGATATTCTCCCTTTTGTTCGGGAGATTGCAAACAGACTGTTGAGGGCTTTGGATATGAGTATGGAATCCCCCACTAGTGGAGGGCCATCGGTGGTTGATGTTCGAGATTTTACTGCATTCTTACTGCCCTTAAGAACTAGAATCAGCGAGCCACTAGCTTTCAAGAGTCTACATTCTTCCAAGTCTGATGAAAAACTAAATAAGCTCCTGTTACTGGATGATATTCATCTTATATTTAATGAATTATTACAAAAAATGGATCAGTGCCTAAATAAAATGCAGGAAATTTTGGCTGCCAAGGAACGAGATGAGGGACATAATTTTTATTCAGCATGGTCTCAGTATCTTTCCATCTTGAAGGAATTGTATCACCTCTCTAAGCTCTATGATGGAGCTGAAGAGGAATTTTGGTGGGTTTTGAGACGTCAGAGAAGCATGCTGGTTCTACTTATCACCCAATATGCAAAGAGAACTGATGATCATCAGTGGATTCTGGAACACAAGTGCGTAACGAATTTCGAATGCAGAAGGCATTTGGTGATGATGATGTTCCCAGATGTAAAAGAGGACTATGAGGAATTGCATGAGATGCTCATTGACCGGTCTCAGCTGTTGGCAGAATCATTTGAATATATAGGACGGGCAGAGCCTGAATCTCTACATGCTGGTCTTTTTATGGAATTCAAAAATGAGGAAGCTACAGGTCCAGGTGTACTGCGAGAGTGGTTTTTCTTGGTATGCCAAGCTTTATTTAATCCACAAAATGCTCTTTTTGTGGCGTGCCCAAATGACCAGAGGAGATTTCTTCCCAATCCTGCATCCAAGGTACATCCTCTGCACCTTGATTACTTCACCTTCTCTGGTCGAGTTATTGCATTAGCTTTAATGCATAGGGTGCAAGTGGGCATCGTTTTGGATCGTGTGTTTTTCATGCAATTGGCTGGAACGTATATTACTTTAGAAGATATACAGGATGCTGATCCATATTTGTACGGTAGCTGCAAGCAAATACTGGAGATGGATGCTGATTTCATTGATTCAGATGCTTTAGGGCTGACCTTTGTTAGAGAGGTGGAGGAATTAGGACACATGAAAGTGGTTGAGCTTTGCCCAGGTGGGAAAAGCCTTGTTGTTAATAGTAAGAACAGGGAGAAGTATGTTGATCTTCTTATACAGGATCGTTTTGTAACATCTATATCTGAGCAGGTGTCACATTTTGCCCAAGGTTTTGCTGATATTCTTTGCAACCCAAGACTCCAACAGTTCTTTTTTCAAAGTCTAGATCTTGAGGATCTTGATTGGATGCTTCATGGGAGTGAAAGTACCATTTCTGTTGAAGATTGGAAGGCACATACCGAATACAATGGCTATAAAGAAACAGATCCTCAAATATCTTGGTTCTGGGAGATTGTGGGGAAAATGTCAGCAGAGCAAAGGAAGGTTCTTTTGTTTTTTTGGACGTCTCTGAAGTATTTACCTGTGGAAGGTTTCAAAGGTTTGTCTTCTCGTCTCTACATTTACAACTCCATGGAACCCGATGATCACCTTCCTTCATCGCACACATGCTTCTTCCGGCTGTGTTTCCCTCCATATCCATCTTTCTGTGTCATGCAAGATTGTCTTCGAATCATCACACAGGAACACATTGGCTGCAGCTTTGGTACGTGGTGA	2706	0.4265	MSVIETPTVDCVHQRGGGGADHHRTSTKRKFDDFTAAFNYDGENFSDFCDSCDLVSVRMRKDEPKAQNFCNSETFNGSLLDVVGTGVSGTAPYACSSRSESTRPWSRLQFFIRLMSEAKTMVLEACPQDTVKSIHERIQAITGIPLFEQRLIYMGKQLQWEQTLVECAIERDCSLQLVGRMRSTEHPQAWQVINDMVSLIWRLCRGEVEHDALKMIKALMTDYLQMTSRIDNDAASGYFQIFLSSSAAAMLVMLYMSPYVGNKECGDCSIRHFLSSCRSTLSKSLHTTCARVVLEFCKLLRRAGPEDPLYLSCRSTFGSFLETAIIAYVSENEKDLSEKQLILIEDILPFVREIANRLLRALDMSMESPTSGGPSVVDVRDFTAFLLPLRTRISEPLAFKSLHSSKSDEKLNKLLLLDDIHLIFNELLQKMDQCLNKMQEILAAKERDEGHNFYSAWSQYLSILKELYHLSKLYDGAEEEFWWVLRRQRSMLVLLITQYAKRTDDHQWILEHKCVTNFECRRHLVMMMFPDVKEDYEELHEMLIDRSQLLAESFEYIGRAEPESLHAGLFMEFKNEEATGPGVLREWFFLVCQALFNPQNALFVACPNDQRRFLPNPASKVHPLHLDYFTFSGRVIALALMHRVQVGIVLDRVFFMQLAGTYITLEDIQDADPYLYGSCKQILEMDADFIDSDALGLTFVREVEELGHMKVVELCPGGKSLVVNSKNREKYVDLLIQDRFVTSISEQVSHFAQGFADILCNPRLQQFFFQSLDLEDLDWMLHGSESTISVEDWKAHTEYNGYKETDPQISWFWEIVGKMSAEQRKVLLFFWTSLKYLPVEGFKGLSSRLYIYNSMEPDDHLPSSHTCFFRLCFPPYPSFCVMQDCLRIITQEHIGCSFGTW	901

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4935g00004	901	FunFam	E3 ubiquitin-protein ligase UPL5	785	900	-	-
	Pral4935g00004	901	SUPERFAMILY	Ubiquitin-like	109	196	IPR029071	-
	Pral4935g00004	901	PANTHER	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	109	899	-	-
	Pral4935g00004	901	ProSiteProfiles	Ubiquitin domain profile.	108	184	IPR000626	GO:0005515
	Pral4935g00004	901	Gene3D	Hect, E3 ligase catalytic domain	785	900	-	-
	Pral4935g00004	901	Gene3D	Hect, E3 ligase catalytic domain	661	743	-	-
	Pral4935g00004	901	SMART	ubq_7	108	180	IPR000626	GO:0005515
	Pral4935g00004	901	SUPERFAMILY	Hect, E3 ligase catalytic domain	536	888	IPR035983	GO:0004842
	Pral4935g00004	901	Pfam	Ubiquitin family	111	182	IPR000626	GO:0005515
	Pral4935g00004	901	ProSiteProfiles	HECT domain profile.	561	901	IPR000569	GO:0004842
	Pral4935g00004	901	SMART	hect_3	559	899	IPR000569	GO:0004842
	Pral4935g00004	901	Gene3D	Hect, E3 ligase catalytic domains	543	770	-	-
	Pral4935g00004	901	CDD	HECTc	540	899	IPR000569	GO:0004842
	Pral4935g00004	901	Pfam	HECT-domain (ubiquitin-transferase)	590	893	IPR000569	GO:0004842
	Pral4935g00004	901	Gene3D	-	103	196	-	-
	Pral4935g00004	901	FunFam	E3 ubiquitin-protein ligase UPL5 isoform A	661	743	-	-
	Pral4935g00004	901	PRINTS	Ubiquitin signature	161	182	IPR019956	-
	Pral4935g00004	901	PRINTS	Ubiquitin signature	140	160	IPR019956	-
	Pral4935g00004	901	PRINTS	Ubiquitin signature	119	139	IPR019956	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4935g00004	Pral-Chr4935	76913	93206	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4935g00004	108	182	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	38.667	1.01e-10	58.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4935g00004	-		-	gmx:100789233	1278.46