LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4930g00001	ATGCTTCTTCAACCTATTTTCCTTTCTGTAATCTCCTTCGTATTCTGGTCGCGTTGGACACTTCACGGCGTCGTTTCGGATCCACAGGCCAATCTTATGTACACCCGCTGCTCACCATCTGCCAACCAAGTGGTCTTGCCCAACTTATCCATCTTCCATGAAAACGTAAACGCAACGTTTCGAGAGATCAAAGAGAATATCGTCTCTGAGAACAAGTACTTGGCGACGGCAAGGAAAGCCAACGCAGAAAACCCTGTTTCCACACTTTTTCAGTGTAGAAACTATATCTCCATTCCCGACTGTGTCGCCTGCTTCGACGTCGCAGCCCGGCAAGTCCGTAAGTGTCCTCCGGCGGCACAAGGTGCCGGCGTTGTCTTCGATGGCTGCTTCCTCAGGTACGAGACCAATGCCTTCTTTTGGAAGACAACGGAGGATTTCACTGCCGTATCATGTGGAAATCAAACTGTAGGAGAATCCATTACATTATTTACCCTCACTTGTGCAACAACTGCTGAAGAATCTGCAAACAACAACACCCAAAAGCAAGGGTTTTTTGCAGCCACAAAGATAGAATTGCCTGATAATAATGGTACAACTGTTTATGGCTTTGCTCAATGTATTGAAACTGTCACTCCAAACGGCTGTTTCAATTGCTTGAACACTGGATATGACAATATTATGGCCACTTGTCTTCCCAATTCGGATGGTAGGGCTTATGCTGATGGATGTTTCATGAGATACTCCACCTCTTCCTTCTTTCCACATTATTACCAGCCCATTGATATTACTTCCTTGGGCAAACAAGGTTCAAGTAAAAAGGGGGCCGTCATCGGGGGAGTTGTTGGAGGATTTACTCTTGTTATGATCCTCATGATATTATTTATCTGTATTAGACGATCAAAATACTCGAAGAGAATTCACAGAGGGGGCATCACTATTGCAACTATGTCGAAAGGCCTGATTTCTTACAGTTATAAGGATTTGAAGTTGGCAACCAAGAATTTTAGGGAAGAAAATAAACTGGGAGAAGGAGGGTTTGGTGTTGTATACAAGGGTACTCTGGAAGGTGGGAAAGTAGTTGCAGTCAAGAAATTAAATTTTCGCCAATTCACAAGGATGGAGGAAGAGTTTGAGAGTGAAGTGAAGTTGATAAGTAATGTTCATCATCTAAATCTTGTTCGACTTCTAGGATGTTGCAGTGAAGGACAAAACAGAATTCTTGTTTATGAATATATGAAAAATAATAGTCTTGACAGGCACCTATTTGGTAAAGGGAAGGGTTCTCTCAACTGGAAGCAAAGGTGTAACATAATTTTAGGAACAGCAAAAGGGTTGGCTTATCTACATGAGGAGTTTCATGTTCGTATCATACATAGAGATATAAAGACTAACAACATCCTTTTAGATGATAATTTACAGCCTAAAATTGCTGATTTTGGATTGGCGAGGCTTTTGCCTGAGGACAAATCTCATCTCAGCACAAAATTTGCAGGAACATTAGGATACACAGCACCTGAATATCTTATTCATGGCCAATTATCAGAGAAAGTTGATATCTATAGTTATGGTGTTGTAGTCTTAGAAATCATTAGTGGTCGACAAAGTAAAGAATTAACCATCGATGGTGATGATGAGGGTCAATTCCTCCTTCAAATGGCTTGGAAATTATATGAGAGAGATATGCACCTAGAGTTGGTGGACAAAACCTTAAGCCCTTTTGACTATGATGAAGAAGAAGTGAAGAAAATGATAGAGATTGGTTTGCTTTGCACTCAAGCATCTACAGAAGGAAGGCCAATGATGTCTGAAGTAGTTGTTTTGCTCCAAAACAAGGATTTGTTAGAGAATAGGAAGCCCACTATGCCTATCTTGATTGAAACTAATTAA	1887	0.4102	MLLQPIFLSVISFVFWSRWTLHGVVSDPQANLMYTRCSPSANQVVLPNLSIFHENVNATFREIKENIVSENKYLATARKANAENPVSTLFQCRNYISIPDCVACFDVAARQVRKCPPAAQGAGVVFDGCFLRYETNAFFWKTTEDFTAVSCGNQTVGESITLFTLTCATTAEESANNNTQKQGFFAATKIELPDNNGTTVYGFAQCIETVTPNGCFNCLNTGYDNIMATCLPNSDGRAYADGCFMRYSTSSFFPHYYQPIDITSLGKQGSSKKGAVIGGVVGGFTLVMILMILFICIRRSKYSKRIHRGGITIATMSKGLISYSYKDLKLATKNFREENKLGEGGFGVVYKGTLEGGKVVAVKKLNFRQFTRMEEEFESEVKLISNVHHLNLVRLLGCCSEGQNRILVYEYMKNNSLDRHLFGKGKGSLNWKQRCNIILGTAKGLAYLHEEFHVRIIHRDIKTNNILLDDNLQPKIADFGLARLLPEDKSHLSTKFAGTLGYTAPEYLIHGQLSEKVDIYSYGVVVLEIISGRQSKELTIDGDDEGQFLLQMAWKLYERDMHLELVDKTLSPFDYDEEEVKKMIEIGLLCTQASTEGRPMMSEVVVLLQNKDLLENRKPTMPILIETN	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4930g00001	628	SUPERFAMILY	Protein kinase-like (PK-like)	314	608	IPR011009	-
	Pral4930g00001	628	ProSiteProfiles	Gnk2-homologous domain profile.	144	252	IPR002902	-
	Pral4930g00001	628	CDD	STKc_IRAK	341	610	-	-
	Pral4930g00001	628	Pfam	Protein kinase domain	335	543	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4930g00001	628	ProSiteProfiles	Gnk2-homologous domain profile.	34	138	IPR002902	-
	Pral4930g00001	628	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	90	626	-	-
	Pral4930g00001	628	Gene3D	-	30	138	IPR038408	-
	Pral4930g00001	628	Gene3D	-	143	252	IPR038408	-
	Pral4930g00001	628	ProSiteProfiles	Protein kinase domain profile.	335	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4930g00001	628	FunFam	Cysteine-rich receptor-like protein kinase 2	412	616	-	-
	Pral4930g00001	628	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	456	468	IPR008271	GO:0004672\|GO:0006468
	Pral4930g00001	628	Pfam	Salt stress response/antifungal	172	249	IPR002902	-
	Pral4930g00001	628	Pfam	Salt stress response/antifungal	47	135	IPR002902	-
	Pral4930g00001	628	SMART	serkin_6	335	601	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4930g00001	628	ProSitePatterns	Protein kinases ATP-binding region signature.	341	364	IPR017441	GO:0005524
	Pral4930g00001	628	Gene3D	Transferase(Phosphotransferase) domain 1	412	620	-	-
	Pral4930g00001	628	FunFam	Cysteine-rich receptor-like protein kinase 2	301	411	-	-
	Pral4930g00001	628	Gene3D	Phosphorylase Kinase; domain 1	298	411	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4930g00001	Pral-Chr4930	7573	12698	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4930g00001	5	612	Receptor kinase-like Gene Family	AT1G70520	36.581	1.28e-117	363

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral4930g00001		Pkinase	2.3e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4930g00001	-		-	pcin:129300003	815.839