LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4913g00010	ATGAGTAGTAATGGTAAATCTCATGGTGGTAAGCAAAGCGCCAGAGATGTCATCTGCAACGCGGGTGCTGGAGCTGCTGCTGGGGCTATAGCGGCTACATTTGTTTGTCCACTGGATGTAATCAAGACGAGACTACAAGTTCATGGCGTTCCTCCTGGGCACAAAGGTAGTTTTATTGTCACAAGCTTGCGGAATATAATCAGGACTGAAGGTTTCAGGGGAATTTACCGTGGCCTTTCCCCAACAATAATAGCATTACTTCCAAACTGGGCGGTTTACTTCACAGTTTATGGTCAACTGAAAGGCCTTTTCCTTTCACAAGATAGTTGCCGCCAATTATCAACTGTTGAAAATATGGTAGCTGCTGCTGGTGCTGGGGCAGCAACAGCAATTTCAACAAATCCATTGTGGGTTGTTAAGACCAGACTTCAAACGCAAGGAATGAGGTCTGACGTTGTTCCGTACAAAAGCATTCTTTCTGCTTTGACGAGGATAATGCACGAGGAAGGCATACGAGGGCTGTATAGTGGCATAGTGCCTTCCTTGGCTGGTGTAAGTCATGTTGCTATTCAATTCCCAGCATATGAAAAGATCAAGTCATACATGGCGGAAAAGGATGATACAACTGTTGACAAACTGGGCCCCGGAAAGGTTGCCATTGCATCCTCAATTGCAAAAGTAATTGCCTCTGTAATGACTTATCCACATGAGGTGATTCGTGCGAGGCTGCAGGAGCAAGGCCAGGCCAAAAGTGCCGGGGTCCAGTATGCTGGGCTTGTTGACTGTTCTAGGAAGGTGTTCCATACTGAAGGCCTTCCCGGCTTCTATCGGGGTTGTGCGACAAATTTACTAAGAACAACTCCATCAGCTGTAATTACATTCACCAGCTTTGAGATGATACAGAGGTTTCTGCAACGTGTTGTACCTCAGGACATGGGATACTCACAAGGGTCTCGTAAACCAGATGACCTTAGCAAGCCGCAGCCAAACAACAGTGACAAAAAATTCGAAGACAACACAGGGTGGAGGCAATCACCGTCTGAGTCTAATAAGACAGCTTTAAATAAAGAGCAGCTATCTAGACACGGATAG	1092	0.4615	MSSNGKSHGGKQSARDVICNAGAGAAAGAIAATFVCPLDVIKTRLQVHGVPPGHKGSFIVTSLRNIIRTEGFRGIYRGLSPTIIALLPNWAVYFTVYGQLKGLFLSQDSCRQLSTVENMVAAAGAGAATAISTNPLWVVKTRLQTQGMRSDVVPYKSILSALTRIMHEEGIRGLYSGIVPSLAGVSHVAIQFPAYEKIKSYMAEKDDTTVDKLGPGKVAIASSIAKVIASVMTYPHEVIRARLQEQGQAKSAGVQYAGLVDCSRKVFHTEGLPGFYRGCATNLLRTTPSAVITFTSFEMIQRFLQRVVPQDMGYSQGSRKPDDLSKPQPNNSDKKFEDNTGWRQSPSESNKTALNKEQLSRHG	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4913g00010	363	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Pral4913g00010	363	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Pral4913g00010	363	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	16	309	IPR044712	GO:0006862\|GO:0055085
	Pral4913g00010	363	SUPERFAMILY	Mitochondrial carrier	16	299	IPR023395	-
	Pral4913g00010	363	Gene3D	Mitochondrial carrier domain	109	307	IPR023395	-
	Pral4913g00010	363	Gene3D	Mitochondrial carrier domain	2	108	IPR023395	-
	Pral4913g00010	363	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Pral4913g00010	363	MobiDBLite	consensus disorder prediction	312	363	-	-
	Pral4913g00010	363	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Pral4913g00010	363	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Pral4913g00010	363	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Pral4913g00010	363	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Pral4913g00010	363	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Pral4913g00010	363	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	304	-	-
	Pral4913g00010	363	Pfam	Mitochondrial carrier protein	20	106	IPR018108	-
	Pral4913g00010	363	Pfam	Mitochondrial carrier protein	112	204	IPR018108	-
	Pral4913g00010	363	Pfam	Mitochondrial carrier protein	213	306	IPR018108	-
	Pral4913g00010	363	MobiDBLite	consensus disorder prediction	326	341	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4913g00010	Pral-Chr4913	149404	155291	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4913g00010	1	353	Chloroplast and Mitochondria Gene Families	AT1G25380	64.146	1.35e-149	424

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4913g00010	K15115		-	gmx:100816376	528.094