Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4911g00003 ATGGAGTTTCACTGCATGAACACACTCACTTCTTACAAGACACTGTCTTCAGTTGTCGGAACCCTCGATCCAGAAATTTCTACTGAGCTAGCCAGGAGACCAGAAGAGAACCCCCTAGACCTCAACAATTTGCCTGATGACTACCATAGAGATGGCAAACAAGTCCTCGAAGATATCTCCTCTTCTGCAGGTTGCAGGAAAAAGAAAAGCGGCGGGAGGGATGGAAAAGAAGAGTGCGGTAAGGTCTATGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAATCTCAGGCTCTTGGAGGTCACATGAACCGTCATCGCCAAGAAAGGGAAACCGAGACGTTGAACCATGCTCGTCAGCTCGTCTTCCGTAGCGATCACACCATAGCCGCCCAAGGGGCCCCTCACTTGGGGTGCTGCCAACCAGTTGTCACAGGAAGCTATGGAGGCAGCAACATGGGAGATCCAACAATGCCTCTGAGATTTCCGAGGTACTTGTCGGGTTCATCCTCGACCCACATATCTCCGCCGCCGCCGCCGCCGCCACCGCCACCGCAGCCGTACATGTACGCGTCTCCGTCACGACCAGTATCATCATATCCCTCACACTATAACTCGACCCAAGTGAATGACTACTATGTGGGTCGCGTTCTGCACAACTATGTGGGCGAGTCATCAAACTACACCTGTATCGGTGCGCCAGTGGGTCAAGGGTTCGTTGGCAAGGACGGGACACTGCAGAATCAGGAAGAGTGCTTGAATTGGGGAAGGAGCTATTCAGCGATCAATCGGTTTCAAGATGGGCTCTAA 807 0.5217 MEFHCMNTLTSYKTLSSVVGTLDPEISTELARRPEENPLDLNNLPDDYHRDGKQVLEDISSSAGCRKKKSGGRDGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRSDHTIAAQGAPHLGCCQPVVTGSYGGSNMGDPTMPLRFPRYLSGSSSTHISPPPPPPPPPPQPYMYASPSRPVSSYPSHYNSTQVNDYYVGRVLHNYVGESSNYTCIGAPVGQGFVGKDGTLQNQEECLNWGRSYSAINRFQDGL 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4911g00003 268 Gene3D Classic Zinc Finger 60 134 - -
Pral4911g00003 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 110 IPR013087 -
Pral4911g00003 268 FunFam Zinc finger protein STAMENLESS 1 57 131 - -
Pral4911g00003 268 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Pral4911g00003 268 SUPERFAMILY beta-beta-alpha zinc fingers 81 111 IPR036236 -
Pral4911g00003 268 PANTHER ZINC FINGER PROTEIN JAGGED 61 236 IPR045320 GO:0003700
Pral4911g00003 268 MobiDBLite consensus disorder prediction 154 194 - -
Pral4911g00003 268 MobiDBLite consensus disorder prediction 172 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4911g00003 Pral-Chr4911 54537 63888 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4911g00003 32 237 C2H2 Transcription Factor Family AT1G13400 42.991 1.81e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4911g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4911g00003 - - aprc:113871902 335.109