Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4909g00007 ATGCTCCAACCTCGGAATCAGCCGTCGAATCAGACGATGAACATCAACAATCTCTGCAAAAAGATGAAGCATAAGCAAAACCCCATTCCATCGAGAAAGCTTCGCATAATCTGTGACGACCCTTACGCCACAGATTCGTCTTCCAGCGAAGACGAAGGAGAAGGACGTTTCGAAAGGCGGCCGAGAAAGATGAAGCGAATCGTTCGTGAGCTCACTCTTCCTCTTTCATCTGCCCTGTCTAAATCCACTGAAACCGAAAGCTCATTTCAGGAAAGCAACAATGGAGTCATCAAGTCCTCCTCCAAGTTCGCTGATGGTCAAACCCAGAACAAGAAGAGGGTTTTTACCAAAACCCCATCAACAAAAAGCTCGTCTTCTTCAAGATTCAGAGGCGTTCGACAGAGAAAATGGGGTAAATGGGCTGCTGAAATTCGTGATCCATTTAAAGGTGTTCGTATCTGGCTTGGTACTTATAATACTGCACAGGAAGCTTCTCAAGCCTATGAAACGAAGAAGATGGAGTTCGAAGCAATGGCTAAAGCTCAAGCTCAGGCTCAATCGGAGAAGAGTCACATTATTTCTTCTTCTTCAGCTCACGTGGCTGCTTCTGTATCAGAAGATTCTGAGAGCGTTTTCTCTCAAACCTCACCTTCCTCTGTGCTTGAACTCGATACTTCAACTTCCAAATCCACTGAAGAAGCTAACGCCACCAATAATGGCAGTTCAAGCAAAGAAGAAAAAGAAGCGCAAAAGGAAGAAAACCAACAGGAAGGACAAGCAGCAGCAGCAGCAGCAGCTACTGTACCTATGGAGTCTAATGATTTTGAGAATGAATTTGCAGGGCTCCCAATCCCAGATCTGAGCTTCCTGAACGATCTGCCAGTACAAGCACTACCAACAACATCATCCGCAGCAACAGCAGCAGATGTTTCAGACATAAACCTCGGATTCGATCTGGACTGTGTAATGTTCGGCGACTTTGGTCAGGGTTTGGATGACCCTCTTGGTTTGGACGACTTACAAATTTGTGGGTTTGATGAGGATGACATGAATGCCAGTGAGCTGCCTGATTTCAATTTTGAACTGTGTGCTGATGATTTTGCTGGTTGGACTGAGGAGCCCCTCAATATACCTTGCGTATAA 1143 0.4558 MLQPRNQPSNQTMNINNLCKKMKHKQNPIPSRKLRIICDDPYATDSSSSEDEGEGRFERRPRKMKRIVRELTLPLSSALSKSTETESSFQESNNGVIKSSSKFADGQTQNKKRVFTKTPSTKSSSSSRFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAQEASQAYETKKMEFEAMAKAQAQAQSEKSHIISSSSAHVAASVSEDSESVFSQTSPSSVLELDTSTSKSTEEANATNNGSSSKEEKEAQKEENQQEGQAAAAAAATVPMESNDFENEFAGLPIPDLSFLNDLPVQALPTTSSAATAADVSDINLGFDLDCVMFGDFGQGLDDPLGLDDLQICGFDEDDMNASELPDFNFELCADDFAGWTEEPLNIPCV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4909g00007 380 MobiDBLite consensus disorder prediction 209 243 - -
Pral4909g00007 380 Gene3D AP2/ERF domain 127 183 IPR036955 GO:0003700|GO:0006355
Pral4909g00007 380 ProSiteProfiles AP2/ERF domain profile. 128 186 IPR001471 GO:0003700|GO:0006355
Pral4909g00007 380 SMART rav1_2 128 190 IPR001471 GO:0003700|GO:0006355
Pral4909g00007 380 MobiDBLite consensus disorder prediction 79 130 - -
Pral4909g00007 380 Pfam AP2 domain 127 176 IPR001471 GO:0003700|GO:0006355
Pral4909g00007 380 CDD AP2 128 168 IPR001471 GO:0003700|GO:0006355
Pral4909g00007 380 MobiDBLite consensus disorder prediction 40 61 - -
Pral4909g00007 380 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Pral4909g00007 380 PRINTS Ethylene responsive element binding protein signature 151 167 IPR001471 GO:0003700|GO:0006355
Pral4909g00007 380 SUPERFAMILY DNA-binding domain 127 175 IPR016177 GO:0003677
Pral4909g00007 380 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 268 - -
Pral4909g00007 380 MobiDBLite consensus disorder prediction 209 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4909g00007 Pral-Chr4909 81246 82804 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4909g00007 30 379 AP2-EREBP Transcription Factor Family AT1G68550 34.066 2.12e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4909g00007 AP2 7.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4909g00007 - - pcin:129321238 461.455