Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4909g00004 ATGAAGATTTTCGTGAAGACTCTAAAAGGCACCCACTTCGAAATTGAAGTGAAGCCTGAAGACACGCTTACTGAAGTGAAGAAAAATATAGAAACTGTTCAAGGTGCGGATGTCTATCCGGCTGCACAACAGATGCTTATCTATCAAGGGAAGGTTCTCAAAGATGGCACCACCTTGGAGGAAAATAAAGTAGTTGAAAATAGTTTTATTGTAGTTATGCTTTCTAAGAGCAAAAGTTCACCTGGTGAGGGTTCTACTACTTCAGCTGCACCTTCAACCAAGACCCCAGCAACAAGTGCTGCTCCCACCTCCACTTCTGTTTCAAGTTCAGCCACACCTCAAACTCCTGCTGCAGCGCCTGCTCCTTCTCCTTCTCCGGCACCTGCTCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTTCAGGCACTGCTGGGTCAGAGTCTGATATCTATGGACAGGCAGCATCTAACCTTGTAGCTGGAAGCAACTTGGAGGAAATGATTCAACAAATTCTTGATATGGGTGGGGGGAGCTGGGATAGGGATACCGTAGTCCGTGCTCTACGTGCTGCTTACAATAATCCTGAGAGAGCCGTTGAGTATTTGTACACAGGTATCCCAGAGCAAGCTGAAGCCCCTCCTGCAGCTCGAGTGCCTGCAAGTCCACAAGCTGCAGATCCCCCAGCACCAGCTTCACAAGCTGCACAGCCAGCACCTGCTGCTCCTCCTCCTACAAGTGGACCAAATGCTAATCCTCTAGACCTTTTTCCCCAGGGCCTCCCCAATGTTGGTTCTGGTGCTGCTGGTGCTGGCACACTAGATTTTCTGCGCAATAGTCAGCAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCAAATCCACAAATACTCCAGCCCATGCTTCAAGAACTTGGGAAGCAAAATCCTCATCTTATGAGATTGATTCAAGAGCACCAGACTGACTTCCTTCGCCTGATAAATGAACCAGTGGAAGGTGGTGAGGGGAACATATTAGGGCAGCTGGCTGCTGCCATGCCACAACAAATAGCCGTCACCCCTGAGGAGCGACAAGCAATTGAACGACTTGAAGCAATGGGTTTTGATCGTGCACTCGTGTTGGAGGTATATTTTGCCTGCAACAAAAATGAGGAGCTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGAGGAGTGA 1197 0.4971 MKIFVKTLKGTHFEIEVKPEDTLTEVKKNIETVQGADVYPAAQQMLIYQGKVLKDGTTLEENKVVENSFIVVMLSKSKSSPGEGSTTSAAPSTKTPATSAAPTSTSVSSSATPQTPAAAPAPSPSPAPAPAPAPAPAPAPSGTAGSESDIYGQAASNLVAGSNLEEMIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPAARVPASPQAADPPAPASQAAQPAPAAPPPTSGPNANPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNILGQLAAAMPQQIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4909g00004 398 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Pral4909g00004 398 Gene3D - 264 329 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral4909g00004 398 SUPERFAMILY XPC-binding domain 269 335 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral4909g00004 398 CDD UBA1_Rad23_plant 158 207 - -
Pral4909g00004 398 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pral4909g00004 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 351 392 IPR015940 -
Pral4909g00004 398 SMART CBM 271 314 IPR006636 -
Pral4909g00004 398 Gene3D - 1 80 - -
Pral4909g00004 398 Pfam XPC-binding domain 273 328 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pral4909g00004 398 PRINTS DNA repair protein Rad23 signature 348 364 IPR004806 GO:0006289
Pral4909g00004 398 PRINTS DNA repair protein Rad23 signature 380 395 IPR004806 GO:0006289
Pral4909g00004 398 PRINTS DNA repair protein Rad23 signature 365 379 IPR004806 GO:0006289
Pral4909g00004 398 PRINTS DNA repair protein Rad23 signature 299 321 IPR004806 GO:0006289
Pral4909g00004 398 SUPERFAMILY UBA-like 335 396 IPR009060 GO:0005515
Pral4909g00004 398 CDD Ubl_Rad23 1 74 - -
Pral4909g00004 398 MobiDBLite consensus disorder prediction 77 116 - -
Pral4909g00004 398 Gene3D - 157 207 - -
Pral4909g00004 398 FunFam UV excision repair protein RAD23 homolog 345 393 - -
Pral4909g00004 398 SMART uba_6 164 204 IPR015940 -
Pral4909g00004 398 SMART uba_6 354 391 IPR015940 -
Pral4909g00004 398 NCBIfam UV excision repair protein Rad23 1 397 IPR004806 GO:0006289
Pral4909g00004 398 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pral4909g00004 398 MobiDBLite consensus disorder prediction 220 250 - -
Pral4909g00004 398 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 387 - -
Pral4909g00004 398 FunFam UV excision repair protein RAD23 1 80 - -
Pral4909g00004 398 MobiDBLite consensus disorder prediction 77 149 - -
Pral4909g00004 398 MobiDBLite consensus disorder prediction 212 262 - -
Pral4909g00004 398 FunFam UV excision repair protein RAD23 B 264 329 - -
Pral4909g00004 398 SUPERFAMILY UBA-like 161 212 IPR009060 GO:0005515
Pral4909g00004 398 MobiDBLite consensus disorder prediction 117 139 - -
Pral4909g00004 398 SMART ubq_7 1 75 IPR000626 GO:0005515
Pral4909g00004 398 FunFam UV excision repair protein RAD23 homolog 157 207 - -
Pral4909g00004 398 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 162 205 IPR015940 -
Pral4909g00004 398 Gene3D - 345 393 - -
Pral4909g00004 398 Pfam UBA/TS-N domain 164 202 IPR015940 -
Pral4909g00004 398 Pfam UBA/TS-N domain 354 389 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4909g00004 Pral-Chr4909 40167 45512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4909g00004 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.58e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4909g00004 K10839 - gmx:100809066 555.444