Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4906g00003 ATGCAGACTCATCAGTACTCTAATTTCTCCTACTTATCGTCGACATGTCTGGAAGCTACTGATGAACAACTGCTTGACGACGAACACTCCATTTCCCTCTCTCTTGGACCTCCTGGCCAACACCACCACCTTACTAATAATACTTATTCCAAGCTCATGAACCCCACTACTGCTACCACATCCTCTTCATCCAACGACGTCGTATCTCTGCACCATCATCCTCATCTTCTTCATCACCACCAAAACCCTAACTCTGATGTTGGCGTCACCGTCGCGCTTCATATCGGCCTTCCTGCCTCTAATAATAACGCTGCTGCAAGCTCTGGCAAACCCGACCCATTAATGAGTTCTTCTTCGGGTCATGTTCCGGGTCAGTATTGGATTCCTTCTCCTTCTCAGATCCTAATCGGGCCCACCCAGTTCTCTTGCTCTGTCTGCAACAAGACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGCCCAGAATCTCTGAGAGGGGCAAGGCCAGCGTCTTCGATTCTGAGACTTCCATGTTATTGTTGCGCCGAAGGTTGCCGGAACAACATCCAGCATCCAAGGTCGAGGCCATTGAAGGATTTCAGAACCCTTCAGACACACTACAAGCGGAAGCACGGAGCGAAGCCGTTCGGCTGCCGGAAGTGCGGCAAGGCGTTCGCCGTGAGAGGAGATTGGAGGACTCATGAGAAGAACTGCGGCAGGCTCTGGTTCTGTATCTGTGGCTCCGATTTCAAGCACAAGAGATCCCTCAAAGACCATGTACGGGCCTTCGGCGACGGCCACGCTGCTCACACCGTCGACAGCCGCGATCACCACCACCAAGAAGAAGTCGACGACGAAGACGAAGACGAGGAAGAAGACGATGATAATAACAGTGACGTAGAAGAGAGAGAGAGAGAGGAGAAGGAGACAAACAATGAAATGAAAGGGAGAATTTCTATTAAGTCTTAA 999 0.5035 MQTHQYSNFSYLSSTCLEATDEQLLDDEHSISLSLGPPGQHHHLTNNTYSKLMNPTTATTSSSSNDVVSLHHHPHLLHHHQNPNSDVGVTVALHIGLPASNNNAAASSGKPDPLMSSSSGHVPGQYWIPSPSQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGARPASSILRLPCYCCAEGCRNNIQHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKAFAVRGDWRTHEKNCGRLWFCICGSDFKHKRSLKDHVRAFGDGHAAHTVDSRDHHHQEEVDDEDEDEEEDDDNNSDVEEREREEKETNNEMKGRISIKS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4906g00003 332 FunFam Zinc finger protein WIP2 195 277 - -
Pral4906g00003 332 SUPERFAMILY beta-beta-alpha zinc fingers 211 246 IPR036236 -
Pral4906g00003 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 246 IPR013087 -
Pral4906g00003 332 SUPERFAMILY beta-beta-alpha zinc fingers 127 162 IPR036236 -
Pral4906g00003 332 Gene3D Classic Zinc Finger 185 273 - -
Pral4906g00003 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Pral4906g00003 332 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Pral4906g00003 332 Gene3D Classic Zinc Finger 140 163 - -
Pral4906g00003 332 MobiDBLite consensus disorder prediction 311 326 - -
Pral4906g00003 332 MobiDBLite consensus disorder prediction 293 310 - -
Pral4906g00003 332 PANTHER ZINC FINGER PROTEIN WIP2 44 302 IPR043584 GO:0003700|GO:0010468
Pral4906g00003 332 SMART c2h2final6 226 246 IPR013087 -
Pral4906g00003 332 SMART c2h2final6 141 163 IPR013087 -
Pral4906g00003 332 SMART c2h2final6 189 221 IPR013087 -
Pral4906g00003 332 MobiDBLite consensus disorder prediction 279 332 - -
Pral4906g00003 332 MobiDBLite consensus disorder prediction 30 67 - -
Pral4906g00003 332 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4906g00003 Pral-Chr4906 10315 12719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4906g00003 27 285 C2H2 Transcription Factor Family AT1G13290 69.231 7.21e-123 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4906g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4906g00003 - - adu:107490921 399.823