Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4905g00006 ATGCAGACTCATCAGTACTCTAATTTCTCCTACTTATCGTCGACATGTCTGGAAGCTACTGATGAACAACTGCTTGACGACGAACACTCCATTTCCCTCTCTCTTGGACCTCCTGGCCAACACCACCACGTATCTCTGCACCATCATCCTCATCTTCTTCATCACCACCAAAACCCTAACTCTGATGTTGGCGTCACCGTCGCGCTTCATATCGGCCTTCCTGCCTCTAATAATAACGCTGCTGCAAGCTCTGGCAAACCCGACCCATTAATGAGTTCTTCTTCGGGTCATGTTCCGGGTCAGTATTGGATTCCTTCTCCTTCTCAGATCCTAATCGGGCCCACCCAGTTCTCTTGCTCTGTCTGCAACAAGACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGCCCAGAATCTCTGAGAGGGGCAAGGCCAGCGTCTTCGATTCTGAGACTTCCATGTTATTGTTGCGCCGAAGGTTGCCGGAACAACATCCAGCATCCAAGGTCGAGGCCATTGAAGGATTTCAGAACCCTTCAGACACACTACAAGCGGAAGCACGGAGCGAAGCCGTTCGGCTGCCGGAAGTGCGGCAAGGCGTTCGCCGTGAGAGGAGATTGGAGGACTCATGAGAAGAACTGCGGCAGGCTCTGGTTCTGTATCTGTGGCTCCGATTTCAAGCACAAGAGATCCCTCAAAGACCATGTACGGGCCTTCGGCGACGGCCACGCTGCTCACACCGTCGACAGCCGCGATCACCACCACCAAGAAGAAGTCGACGACGAAGACGAAGACGAGGAAGAAGACGATGATAATAACAGTGACGTGTTCAAGAGAGAGAGAGAGGAGAAGGAGACAAACAATGAAATGAAAGGGAGAATTTCTATTAAGTCTTAA 927 0.5092 MQTHQYSNFSYLSSTCLEATDEQLLDDEHSISLSLGPPGQHHHVSLHHHPHLLHHHQNPNSDVGVTVALHIGLPASNNNAAASSGKPDPLMSSSSGHVPGQYWIPSPSQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGARPASSILRLPCYCCAEGCRNNIQHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKAFAVRGDWRTHEKNCGRLWFCICGSDFKHKRSLKDHVRAFGDGHAAHTVDSRDHHHQEEVDDEDEDEEEDDDNNSDVFKREREEKETNNEMKGRISIKS 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4905g00006 308 Gene3D Classic Zinc Finger 161 249 - -
Pral4905g00006 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 144 IPR013087 -
Pral4905g00006 308 FunFam Zinc finger protein WIP2 171 253 - -
Pral4905g00006 308 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Pral4905g00006 308 MobiDBLite consensus disorder prediction 284 302 - -
Pral4905g00006 308 MobiDBLite consensus disorder prediction 269 283 - -
Pral4905g00006 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 222 IPR013087 -
Pral4905g00006 308 SMART c2h2final6 117 139 IPR013087 -
Pral4905g00006 308 SMART c2h2final6 202 222 IPR013087 -
Pral4905g00006 308 SMART c2h2final6 165 197 IPR013087 -
Pral4905g00006 308 SUPERFAMILY beta-beta-alpha zinc fingers 112 138 IPR036236 -
Pral4905g00006 308 Gene3D Classic Zinc Finger 116 139 - -
Pral4905g00006 308 SUPERFAMILY beta-beta-alpha zinc fingers 187 222 IPR036236 -
Pral4905g00006 308 MobiDBLite consensus disorder prediction 255 308 - -
Pral4905g00006 308 PANTHER ZINC FINGER PROTEIN WIP2 14 276 IPR043584 GO:0003700|GO:0010468
Pral4905g00006 308 MobiDBLite consensus disorder prediction 30 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4905g00006 Pral-Chr4905 79203 81605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4905g00006 27 275 C2H2 Transcription Factor Family AT1G13290 69.412 3.76e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4905g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4905g00006 - - aprc:113870355 401.364