Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4905g00003 ATGGACGGAGGAAGCTCTATGGACGAAAGCATTACTACTGATTCAGTTTCTGTTTCCCTTTCTCCGGCGAAGATCCCGTCGAAGAAGTTATCGCCGCCGCCACACAACAGCCTTTGCCGCGTCGGCAGCGGTGCTAGCACCATCATCGACTCTGACATCGTCGGAGTCGAAGCTGAATCCCGGAAACTCCCGTCGTCGAGATTCAAAGGGGTCGTTCCCCAGCCCAATGGCCGTTGGGGTGCTCAGATTTACGAGAAACACCAGCGAGTTTGGTTGGGCACTTTCAATGAAGAAGATGAGGCTGCCAGAGCCTACGACATCGCCGCTCAGCGATTCCGTGGGCGAGACGCCGTCACCAATTTCAAACCTCTCGCCGACGGCGGCTCCGGCGCCGATGAACACGACGACTTTGAAGCCGCGTTCCTCAACGCGCACTCGAAAGGAGAGATCGTCGACATGCTCAGGAAGCACACTTACAATGACGAGCTGGAACAGTTCAAGCGCAACTACGGATTGACGGTGGACGCAAACGGGAAACGGATCATCAGGGAAGGACCCAAGGCTTCGGGTCGGGTCAACAACGCGCGTGATCAGCTCTTCGAGAAAGCCGTGACACCGAGCGACGTTGGAAAGCTGAATCGGCTGGTGATCCCTAAGCAGCACGCGGAGAAGCACTTCCCCTTGCCGTTGCCGGTGGGAACCTCCGCGCCGTACACGGCGGCGACGGTGGCCGCGAAGGGCGTGCTATTGAACTTCGAAGACGGAGGCGGAAAGGTGTGGAGGTTCAGGTACTCGTACTGGAACAGTAGCCAGAGCTACGTTCTGACCAAAGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTCAAAGCCGGAGACATGGTTTCCTTCTCCCGGTCGATCGGACCGGAGAAGCAACTATACATCGACTGGAAGAAAAACAGAATGAGCACCACCACCACCACCACCAGAACAACTTCAGGGGCGGAATTGTTAGAACCGGCCGGTCCAGTGGTGGTGGAGCCGATTCAGATGGTAAGACTATTTGGGGTCAACATTTTGAAGATGCCCGGTTCAGATGCCATTGCTCCTCCAAGTGGGTGTTACAATGGGAAGAGAAAAGAGATGGATCTGTTCTCATTGGAATGTACCAAAAAGCCAAAGATCATTGGAGCTTTGTAA 1179 0.5522 MDGGSSMDESITTDSVSVSLSPAKIPSKKLSPPPHNSLCRVGSGASTIIDSDIVGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLADGGSGADEHDDFEAAFLNAHSKGEIVDMLRKHTYNDELEQFKRNYGLTVDANGKRIIREGPKASGRVNNARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPLPVGTSAPYTAATVAAKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDMVSFSRSIGPEKQLYIDWKKNRMSTTTTTTRTTSGAELLEPAGPVVVEPIQMVRLFGVNILKMPGSDAIAPPSGCYNGKRKEMDLFSLECTKKPKIIGAL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4905g00003 392 MobiDBLite consensus disorder prediction 1 42 - -
Pral4905g00003 392 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 62 363 IPR044800 GO:0003700
Pral4905g00003 392 ProSiteProfiles B3 DNA-binding domain profile. 200 314 IPR003340 GO:0003677
Pral4905g00003 392 Pfam AP2 domain 67 114 IPR001471 GO:0003700|GO:0006355
Pral4905g00003 392 CDD B3_DNA 199 304 IPR003340 GO:0003677
Pral4905g00003 392 SMART B3_2 200 314 IPR003340 GO:0003677
Pral4905g00003 392 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Pral4905g00003 392 FunFam AP2 domain-containing protein RAP2.8 66 123 - -
Pral4905g00003 392 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Pral4905g00003 392 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
Pral4905g00003 392 Pfam B3 DNA binding domain 200 310 IPR003340 GO:0003677
Pral4905g00003 392 MobiDBLite consensus disorder prediction 6 24 - -
Pral4905g00003 392 SUPERFAMILY DNA-binding pseudobarrel domain 199 299 IPR015300 -
Pral4905g00003 392 Gene3D - 188 325 IPR015300 -
Pral4905g00003 392 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Pral4905g00003 392 CDD AP2 66 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4905g00003 Pral-Chr4905 57254 58818 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4905g00003 8 392 B3 DNA Binding Superfamily AT1G25560 56.888 2.65e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Pral4905g00003 B3 1.5e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4905g00003 K09287 - gmx:100801107 517.309