Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4895g00047 ATGGAATATGGTGCCTTAGTACACAATAATTCTGCATTTGATGCCTTATCAGACAGTACTGCCTCAGTTTCAGAAGGGGATTTCATTGACGAGGTCCTTGCGCATGGTTGCTGGCTGGAAACCACCGGAGGATCATACAACCTCACTCAGCCTTGTGCTACGAATCCCCCTTCTCTCAGTGACCCTAATTTGCACTACTGGACATCCTCAGATCCAAATCACCAAATCTATCAGCAAGAATCAGAGTTAAGTTTTCCATTCCAATCCGAAAGTTTCGTGGTTGCGAGCTCTGAAGTGGGCAAGAGGTGGTGGATTGGACCAAAGGCAAATCCCGGTCCATCTTCCTCAGTCAAAGAAAGATTAGTTCTTGCCGTGGGATACTTGAGAGACTACACCAAGAATGCCAATGTGTTTCTTCAGATATGGGTGCCCACCAGGAGAGAGGGAACATACGTTCTAACCGGCGCTCACGATCACGCTCCCCCTTACCCATCCGTCGATGATCCGAGCCGTAAGACTCTTGAATATTACCGAAATGTTTCCAAAGGTTATCAGCTGGCTGCCGAGGAGGAATCAGAGGAGTGCCGAGTAATCCTAGGAAAATTGCCTGATCAGTGGACCCCCACTGTTCGCTTTTTCAAAAGCCACGAGTATGTTACATATGTAAATTATGCACAGCAGCACTACGATTTGCGCGGATCATTGGCCCTTCCCGTGTTTGAGAGAGGCAACGGGACATGTCTCGGCGTTGTTGAGATTGTAATGACCAATCACAACATCAACCATCACCCGCAAATCGACAATGCCTGCCATTCTCTCCAGACTGTTGATTTTAACAAGAGTACTTGCCAGAACCTCATTTCTCCGTCTGTGAAGGTATTTGACGAGTTGTACCTAGCTGCACTAAATGAGATAGTAGAGGTGTTGACGTCTGTGTGCAAGACACATAATTTGCCTTTAGCCCTGACTTGGGCTCCCTGCGGGCAGCAAGGTAAGGGCGGATGTCCGAACGATAATTTCGTCGGTTGTTTGTCCACCGTGGATTCTGCTTGTTACGTGACGGATTTAGATTTACTTGGGTTCCAAGAAGCCTGCTCTGAGTACCACCTTCTTAGAGGGCAAGGCATCGTTGGCACAGCCTTCACCACCACCAAGCCATGCTTTGCAACCGACATAACTGCCTTCAGCAAAACTGAGTATCCTCTGTCTCACCATGCCACCATGTTTGGGTTGCATGCCGCCGTCGCTATTCCACTCCGTAGTGTCTACACCGGATCCGCTGATTTTGTGTTGGAATTTTTCTTACCGAAGAATTGCCATGACGGCGAAGAACAAAAGCAGATGCTGAATTTATTATGTGTCGTGGTACAACAAGCTTGCCGGAGTTTACATGTTGCCATGGACAAACAGATGGAGGAAGAATTCACGTTTACCGTTGGAGATATGCTGGCTGCGGCTTCCAAAGGCGGAGCCCACAAAGAAGAAACTCTTGAGTTTGGGTCTTGTAATTTAGAGGAGGCATCTTCAAAAGAATCGTCGTGGATTGCACATATGATGGAGGCTCAAACCCAACACAAGGGCAAAGGCGTGTCAGTGTCGTTGGAATACCTGGAAGAACCAAAACAAGAGTTCAAAGTGACAACCAACTGGGAAGGTGCCCACGTGGGATTCTGCAATGGGCAGACATTTTCAGATTATGGACAAATTCACCCGAGCTCAGCGGCATCCAGAGCGAGTGTAGAGGGTGGAGGAGAATCTCATGCTTTTGGTGGACGCCGCTCGTCTGGTGGCAGAAAATCAGGCGAGAAGAGACGAACCAAGGCCGAGAAGACTATCAGCTTGCCAGTTCTTCGACAATACTTTGCAGGAAGCCTTAAAGATGCCGCCAAGAGCATCGGCGTGTGTCCCACGACTCTTAAAAGGATATGCAGACAACATGGAATTACCAGATGGCCTTCAAGGAAAATAAAGAAGGTAGGACACTCGTTAAGGAAACTTCAGCTTGTAATCGATTCAGTACAAGGTGCTGAGGGCGCCATTCAGATCGGTTCCTTCTATTCCAGTTTTCCAGAGTTGAGCTCCACAAATTTGTCTGGCAGCGGTCCTTCTCAATCGTCAAGCATCAGCGACCATTCCAAGAAAGCGCATGCTCGTCCCGAGCACGGCTTATATGGCCACGGCGGCCCAACATTAAAATCTCCGCCCTCTTGTTGCAGCCAGACTTCCACCATCATTAACCGGTCCAGTGCAGATTTTATAATGGCAGAAAACCCAGAAGCATTGCTCAAGAGAGCTCATACTCACGTTGAAGCAGAATTGCGTGAGGATACAAAACATTTCGCAAGCCAGCAGAAACCACTCGGGGAGCATCCCAGTGTTGAGATTTTACCTCCATTGCCTGAAAATAGTGGATGGAACGCACGAGATGGTGATGCTTTTAGGGTGAAAGCTACTTTTGGGGACGAAAAAATTCGCTTTAGCTTGCAACCAAATTGGGGGTTTAGAGAACTGCAACTGGAGATCGCAAGACGGTTCAATCTAGATGATGTGAGCAACATTGGTCTCAAGTATTTAGATGAGGAGGGTGAGTGGGTTCTTTTAACGTGCGATGCTGATCTTGAGGAGTCTAAAGACACATATCGATCATCTAAGAACCGTACAATGAGGTTCGCCCTGTTTCAAGCTTCACCCCTAAATCTAGCCAACACTTTCGGCAGCAATAGCTCATCCTGA 2733 0.4786 MEYGALVHNNSAFDALSDSTASVSEGDFIDEVLAHGCWLETTGGSYNLTQPCATNPPSLSDPNLHYWTSSDPNHQIYQQESELSFPFQSESFVVASSEVGKRWWIGPKANPGPSSSVKERLVLAVGYLRDYTKNANVFLQIWVPTRREGTYVLTGAHDHAPPYPSVDDPSRKTLEYYRNVSKGYQLAAEEESEECRVILGKLPDQWTPTVRFFKSHEYVTYVNYAQQHYDLRGSLALPVFERGNGTCLGVVEIVMTNHNINHHPQIDNACHSLQTVDFNKSTCQNLISPSVKVFDELYLAALNEIVEVLTSVCKTHNLPLALTWAPCGQQGKGGCPNDNFVGCLSTVDSACYVTDLDLLGFQEACSEYHLLRGQGIVGTAFTTTKPCFATDITAFSKTEYPLSHHATMFGLHAAVAIPLRSVYTGSADFVLEFFLPKNCHDGEEQKQMLNLLCVVVQQACRSLHVAMDKQMEEEFTFTVGDMLAAASKGGAHKEETLEFGSCNLEEASSKESSWIAHMMEAQTQHKGKGVSVSLEYLEEPKQEFKVTTNWEGAHVGFCNGQTFSDYGQIHPSSAASRASVEGGGESHAFGGRRSSGGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYSSFPELSSTNLSGSGPSQSSSISDHSKKAHARPEHGLYGHGGPTLKSPPSCCSQTSTIINRSSADFIMAENPEALLKRAHTHVEAELREDTKHFASQQKPLGEHPSVEILPPLPENSGWNARDGDAFRVKATFGDEKIRFSLQPNWGFRELQLEIARRFNLDDVSNIGLKYLDEEGEWVLLTCDADLEESKDTYRSSKNRTMRFALFQASPLNLANTFGSNSSS 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4895g00047 910 ProSiteProfiles PB1 domain profile. 812 895 IPR000270 GO:0005515
Pral4895g00047 910 SUPERFAMILY CAD & PB1 domains 802 897 - -
Pral4895g00047 910 MobiDBLite consensus disorder prediction 696 740 - -
Pral4895g00047 910 Gene3D - 810 897 - -
Pral4895g00047 910 PANTHER PROTEIN NLP8 65 907 IPR045012 GO:0003700
Pral4895g00047 910 Pfam RWP-RK domain 612 659 IPR003035 -
Pral4895g00047 910 Pfam PB1 domain 813 894 IPR000270 GO:0005515
Pral4895g00047 910 ProSiteProfiles RWP-RK domain profile. 598 679 IPR003035 -
Pral4895g00047 910 SMART PB1_new 812 895 IPR000270 GO:0005515
Pral4895g00047 910 MobiDBLite consensus disorder prediction 696 710 - -
Pral4895g00047 910 MobiDBLite consensus disorder prediction 574 608 - -
Pral4895g00047 910 CDD PB1_NLP 813 894 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4895g00047 Pral-Chr4895 288283 291577 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4895g00047 10 906 NLP Transcription Factor Family AT4G35270 45.791 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pral4895g00047 PB1 3e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4895g00047 - - pcin:129292760 1646.71