Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4895g00044 | ATGGGCGGCTCAAAGGAAAACCAAGACCATCTGGATTCGCTGATGCCTTCATCAAATCTTCAAGGCTGTTCAAGAATGGAGGGCATCAAGTTTATGAAGGAGATGACCCAGAGTAATCGTCGGGCTCTGAGCAATATCAATCAGAATATTATGGAGGCTACTCATAAGCCTTGTGTGGTCAACAGAAGAGACCCATTAGGAAGATATACAGCACAGACAGTTCAGCACTGCCCTGAAGAAACTAAAAAACTAAGCCTATTGGCTCCGAACTCCAGTTACCGGTTGGACTGCGAGATAACAGATATTGGAGAATACGAGGATGTTGGTGACAATGGAATTCCAGTGTTTGTGAAGCACACGGAAGCAATGCTGGACGAAATTGACAGATTAGAGGAAGTGGAAATGGAAGACGTGGAGGAGCCCGTTATGGACATCGATGTTAGTGATACGAAAGATCCACTAGCAGTTGTTGAATATATAGATGAGATCTACGAATTTTATAAGAAAATTGAGAATACCAGCTGCGCCTCTCCAGATTACATGGCTGGCCAGTTTGACATCAATGAGAAGATGAGGGCTATCCTCATTGACTGGCTTATCGAGGTTCACTACAAATTTGAGCTTATGGAGGAGACATTGTACCTTACCGTCAGTCTGATAGACAGGTTCTTGGAGCGTCAGGCGGTGATCAGAAAGAAGCTTCAGTTGGTCGGTGTAACAGCCATGCTAATAGCTTGCAAATATGAGGAGGTTTCTGTCCCCACTGTTGAGGATTTTATCTTGATAACAGACAAGGCATACAAGAGGGAGGAAGTTATAAATATGGAGAAGTTAATGATGAACACGTTGCAATTCAACCTGTGTGTGCCTACTCCATATGTGTTCATGAGGAGATTTCTTAAAGCAGCTCAATTTGACAAAAAGCTGGAACTCTCGTCCTCCTTCATAATCGAGCTTTGCTTGGTGGAATACAAAATGCTCAAGTTTTCACCATCTTTGCTAGCTGCTGCAGCCATTTACACAGCTCAGTGTAGTCTGTACCAGTTTAAGCAGTGGACAAAGACGAGTGAATGGTACACCAATTACTCGGAAGACCAGCTTCTAGAGTGCTCAAGAATGATGGTTACTTTCCATCAGAAGGCTGGGACTGGAAAACTCACAGGAGTCTGCAGGAAGTACAGCACGTGGAAGTATGGTTATGCCGCAAATATGAAACCAGCCCTGTTTTTGCTGGGCTCTGATTGA | 1245 | 0.4402 | MGGSKENQDHLDSLMPSSNLQGCSRMEGIKFMKEMTQSNRRALSNINQNIMEATHKPCVVNRRDPLGRYTAQTVQHCPEETKKLSLLAPNSSYRLDCEITDIGEYEDVGDNGIPVFVKHTEAMLDEIDRLEEVEMEDVEEPVMDIDVSDTKDPLAVVEYIDEIYEFYKKIENTSCASPDYMAGQFDINEKMRAILIDWLIEVHYKFELMEETLYLTVSLIDRFLERQAVIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYKREEVINMEKLMMNTLQFNLCVPTPYVFMRRFLKAAQFDKKLELSSSFIIELCLVEYKMLKFSPSLLAAAAIYTAQCSLYQFKQWTKTSEWYTNYSEDQLLECSRMMVTFHQKAGTGKLTGVCRKYSTWKYGYAANMKPALFLLGSD | 414 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4895g00044 | 414 | Pfam | Cyclin, N-terminal domain | 162 | 288 | IPR006671 | - | |
| Pral4895g00044 | 414 | CDD | CYCLIN_AtCycB-like_rpt2 | 290 | 406 | - | - | |
| Pral4895g00044 | 414 | PIRSF | Cyclin_A_B_D_E | 4 | 93 | IPR046965 | GO:0016538|GO:0044772 | |
| Pral4895g00044 | 414 | PIRSF | Cyclin_A_B_D_E | 106 | 414 | IPR046965 | GO:0016538|GO:0044772 | |
| Pral4895g00044 | 414 | SMART | Cyclin_C_2 | 290 | 407 | IPR004367 | - | |
| Pral4895g00044 | 414 | Gene3D | - | 162 | 402 | - | - | |
| Pral4895g00044 | 414 | PANTHER | CYCLINS | 126 | 385 | IPR039361 | - | |
| Pral4895g00044 | 414 | ProSitePatterns | Cyclins signature. | 192 | 223 | IPR006671 | - | |
| Pral4895g00044 | 414 | FunFam | G2/mitotic-specific cyclin-1 | 277 | 402 | - | - | |
| Pral4895g00044 | 414 | SMART | cyclin_7 | 294 | 376 | IPR013763 | - | |
| Pral4895g00044 | 414 | SMART | cyclin_7 | 197 | 281 | IPR013763 | - | |
| Pral4895g00044 | 414 | SUPERFAMILY | Cyclin-like | 151 | 288 | IPR036915 | - | |
| Pral4895g00044 | 414 | Gene3D | - | 176 | 288 | - | - | |
| Pral4895g00044 | 414 | SUPERFAMILY | Cyclin-like | 289 | 405 | IPR036915 | - | |
| Pral4895g00044 | 414 | CDD | CYCLIN_AtCycB-like_rpt1 | 143 | 285 | - | - | |
| Pral4895g00044 | 414 | Pfam | Cyclin, C-terminal domain | 290 | 405 | IPR004367 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral4895g00044 | Pral-Chr4895 | 264890 | 267902 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral4895g00044 | 13 | 411 | Core Cell Cycle Gene Families | AT1G20610 | 57.311 | 5.05e-161 | 458 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4895g00044 | K21777 | - | qsa:O6P43_011387 | 556.599 |