Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4891g00004 ATGTCTGAGTCACCTCGTCCCGATATGGACGAGTCTGTGACTCTGACGAAGTCCGTACCACGTTTAGAGGGGTCGGGAGAGGAGCAACCCTCGTCCAACTCGAATGGGTTAACTCAGCAAACACCGGAGCAACTGGTGGCCAGAGCCATAGCTCCCGTGAAGGCGGAGTTCCTTCGTCCTCCTCCTCTTAGAGGTTCCTCCACGATCCAGAACGAAGATGTTTCTGAAGATGGGGATAAGGCCTCTGTTCAATCCGCCGGATTAGTGAAAGAGAAGAAGTCAAAGCGCCAACTCAAGCGTGAACGTCGTCAGGAACAGAAGTCTGCTAAAAACATTTGTCCGGAAATTGCAAAGACAGGAGATATTAGTTCATGTCCTTACAACGACAAATGCCGTTTCAGCCATGACATAGAAGCCTTCAAGGCCCAGAAACCAACTGACTTAGAGGGAGAATGCCCTTTTTTAAAAGCTGAAGGTTTTTGTCCCTATGGGTTAGCATGTAGGTTTTCCAGCACACATACAGAAAGTATGCCTTCTGGCAATCTCAGTGATCGGAGAAAAACTTCCGAAAGAAATGGACTGAGCAAAGATGTTCAAAAGCTTTTATGGAAAAATAAGATGCGCTTCCCCAAGGCAGATGCCAGTCTCAAAGCTCTTGGACTCTGGGAATCATCTAAGTTAAAAAGGAACGACTTAGAAGATAAGGAAGGTGGCAACATTGATTCAAACAATGGCCACAATGCTGATTCTGACTTACCTTGCCCTCAGAAGAGAAGAAAAACTGAAGACAATTCTGGCCTTGATGTGGCAGAAAATGAAGGTGTGTGCGCTTCTGACCAAAACATTGAAAAAAGCTGCGTGCAAGCTGAACTTGCCACAGTAACTAATGTCATGCCCCCCGAAACGGATCAAAGCATGAAGTTACACCCACGAGAAAGGAAGCTTATTGATTTTAGAGATAAGTTGTATCTTGCGCCTTTGACCACTGTTGGGAATCTCCCATTCAGGAGGGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGAGAAATGGCGATGTGCACAAATCTCTTGCAGGGTCAAGCATCAGAATGGGCATTGCTGAGACGTCATTTATCAGAAGATTTATTTGGCGTGCAAATATGTGGGGCATATCCAGACACTATTGCACGAACTGTAGAGCTGATAGAAAATGAATGTACACTAGATTTCATTGATATAAATATGGGTTGCCCAATTGATATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGGATGAAAAGCATTGTAGAGGTAGCTTCGGGCACAGTGGAGAAACCAATAACTATCAAGGTACGGACAGCTTATTTTGAAGGGAAAAATCGTGTTGATTCTATTATTGCCGACATGGGTTCTTGGGGAGCTAATGCAGTAACAATACATGGTAGATCACGTCAGCAACGATACAGCAAGCTTGCTGACTGGGACTATATCTACCAATGTGCCAGGAAGGCACCTACTACTTTGCAAGTGGTAGGGAATGGGGATATTTTTTCATATGTTGATTGGAACAACCACAAGGCTGAATGCTCTGAGCTTGCTACATGCATGATTGCTCGTGGAGCACTGATCAAGCCTTGGATATTTACCGAAATCAAGGAACAAAGGCACTGGGACATTAGTTCTGGGGAGCGATTCAATATTTTGAAAGATTTTGTACGTTTTGGCCTTGAACACTGGGGTTCTGATACAAAAGGAGTGGAGACAACCAGACGGTTTTTATTGGAATGGCTTAGCTACACATGTAGATACATACCTGTTGGCCTTTTAGATGTTATTCCACAAAGGCTAAACTGGCGTCCGCCATCTTACTACGGACGTGATGACCTTGAGACTCTAATGGCTTCGGACTCTGCAGCTGACTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCAGATGGCTTTTCATTTACGCCAAAGCATAAATCAAATGCTTATGATAGTGCTCAGAATGGCTGA 2022 0.4436 MSESPRPDMDESVTLTKSVPRLEGSGEEQPSSNSNGLTQQTPEQLVARAIAPVKAEFLRPPPLRGSSTIQNEDVSEDGDKASVQSAGLVKEKKSKRQLKRERRQEQKSAKNICPEIAKTGDISSCPYNDKCRFSHDIEAFKAQKPTDLEGECPFLKAEGFCPYGLACRFSSTHTESMPSGNLSDRRKTSERNGLSKDVQKLLWKNKMRFPKADASLKALGLWESSKLKRNDLEDKEGGNIDSNNGHNADSDLPCPQKRRKTEDNSGLDVAENEGVCASDQNIEKSCVQAELATVTNVMPPETDQSMKLHPRERKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHLSEDLFGVQICGAYPDTIARTVELIENECTLDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTVEKPITIKVRTAYFEGKNRVDSIIADMGSWGANAVTIHGRSRQQRYSKLADWDYIYQCARKAPTTLQVVGNGDIFSYVDWNNHKAECSELATCMIARGALIKPWIFTEIKEQRHWDISSGERFNILKDFVRFGLEHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPSYYGRDDLETLMASDSAADWIRISEMLLGKVPDGFSFTPKHKSNAYDSAQNG 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4891g00004 673 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 103 182 - -
Pral4891g00004 673 MobiDBLite consensus disorder prediction 252 267 - -
Pral4891g00004 673 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 317 559 - -
Pral4891g00004 673 Gene3D Aldolase class I 317 559 IPR013785 -
Pral4891g00004 673 MobiDBLite consensus disorder prediction 232 267 - -
Pral4891g00004 673 SUPERFAMILY FMN-linked oxidoreductases 321 634 - -
Pral4891g00004 673 Pfam Dihydrouridine synthase (Dus) 324 558 IPR035587 -
Pral4891g00004 673 Coils Coil 88 108 - -
Pral4891g00004 673 ProSitePatterns Uncharacterized protein family UPF0034 signature. 405 423 IPR018517 GO:0008033|GO:0017150|GO:0050660
Pral4891g00004 673 CDD DUS_like_FMN 321 556 IPR035587 -
Pral4891g00004 673 SMART c3hfinal6 108 137 IPR000571 GO:0046872
Pral4891g00004 673 SMART c3hfinal6 148 175 IPR000571 GO:0046872
Pral4891g00004 673 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 40 667 - -
Pral4891g00004 673 ProSiteProfiles Zinc finger C3H1-type profile. 151 176 IPR000571 GO:0046872
Pral4891g00004 673 ProSiteProfiles Zinc finger C3H1-type profile. 107 138 IPR000571 GO:0046872
Pral4891g00004 673 MobiDBLite consensus disorder prediction 25 45 - -
Pral4891g00004 673 MobiDBLite consensus disorder prediction 1 112 - -
Pral4891g00004 673 Gene3D - 102 182 - -
Pral4891g00004 673 MobiDBLite consensus disorder prediction 172 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4891g00004 Pral-Chr4891 39659 44463 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4891g00004 Dus 4.8e-50 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4891g00004 K05544 - gmx:100783494 1019.61