Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral488g00008 ATGTCTGCTTCTGCAAATTCTCAGCTACTCTTCCATGACCTTCTTGGCGATCATCAATTCCAGTACTCTAGAAGGTTACTGTTCCTTCACTCCCACCTCAACTCATCAACCAACCCCTCATCTTCCAACAACTCGGCAGAATCCTCCTTCCTCGGAGATGGTAACTTCGATGCAAATGTTATCATGGTACTGTCTGTCCTCTTGTGTGCTCTCATCTGCTCACTGGGTTTAAACTCCATCATCAGATGTGCCTTAAGGTGTTCCAACGTCGTCGTTCTCAATAACAACGACTTGAACACGACGAACCCTCCGGCTAGATTAGCCAGCACCGGAGTGAAGAAGAAGGCTCTCAAAACTTTCCCTACAGTGACCTACTCTTCTGAGTTGAAGCTCCCAGGTTTGGACCCAGAGTGTGCGATCTGTCTCTCTGAGTTCAACAATGGCGATCGCCTTCGAATTCTTCCAAAGTGCAACCATGGCTTCCATGTTCGTTGTATTGACAAGTGGCTCAGCTCGCATTCGTCTTGCCCTAAGTGCAGGCACTGCCTTATTCAGACCTGTCACAAGATCATAGGGTCAGAAACGACGACGTCCCAGCCATCTTCTGCTGCTTCTGCTGAAACTATTGTGAGGATCGCACCTTTAGAACCAGAGGGCATGGTACGTAATAACGATGCCTAG 681 0.4831 MSASANSQLLFHDLLGDHQFQYSRRLLFLHSHLNSSTNPSSSNNSAESSFLGDGNFDANVIMVLSVLLCALICSLGLNSIIRCALRCSNVVVLNNNDLNTTNPPARLASTGVKKKALKTFPTVTYSSELKLPGLDPECAICLSEFNNGDRLRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIQTCHKIIGSETTTSQPSSAASAETIVRIAPLEPEGMVRNNDA 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral488g00008 226 FunFam RING-H2 finger protein ATL73 99 185 - -
Pral488g00008 226 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Pral488g00008 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 184 IPR013083 -
Pral488g00008 226 Pfam Ring finger domain 137 180 IPR001841 -
Pral488g00008 226 PANTHER RING-H2 FINGER PROTEIN ATL78 19 220 IPR044602 GO:0016567|GO:0016740
Pral488g00008 226 SMART ring_2 138 179 IPR001841 -
Pral488g00008 226 CDD RING-H2_EL5-like 137 180 - -
Pral488g00008 226 SUPERFAMILY RING/U-box 116 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral488g00008 Pral-Chr488 49221 50218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral488g00008 33 184 C3H Transcription Factor Family AT3G10910 44.872 1.37e-41 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral488g00008 K19040 - gmx:100787934 273.863