Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral488g00007 ATGTCTGCTTCTGCAAATTCTCAATTCCAGTACTCTAGAAGGTTACTCTTCCTAAACTCCCACCTCAACTCATCCAACCCATCTTCTTCTCACAACAACAACTCGACACAATCATCGTCTTACTTCCTAGGAGAGGTTGACTTTAATGTAAATATCATCATGGTGCTGTCTGTCCTCGTCTTTACTCTCATCTGCTCGCTGTGTTTAAACTCCATCATCAGATGTATCTTAAAGTGTTATTTCAGCAACAGCGTACTCAATAACAACAATGTCTCGAACACGACAACGAACCCTCCGGCTAGATTGGCCAACACTGGGTTGAAGAAGAAGGCTCTCAAGAGTTTCCCTAGAGTGACCTACTCTTCTGAGTTGAAGCTCCCAGGTTTGGACACAGAGTGTGCGATCTGTCTCTCTGAGTTCAACAATGGCGATCGCCTTCGAATTCTTCCAAAGTGCAACCATGGCTTCCATGTTCGTTGTATTGACAAGTGGCTTAGCTCGCATTCGTCTTGCCCTAAATGCAGACACTGCCTTATTCAGACCTGTCACAAGATCGTAGGGTCGGAGACGACGACGACGACGACGACCCAGCCTTCTTCTGTTGCTCCTGCTGAAACTATTGTGAGGATCGCACCTTTAGAACCAGAGGGTATGGTGCGTAACTAA 666 0.461 MSASANSQFQYSRRLLFLNSHLNSSNPSSSHNNNSTQSSSYFLGEVDFNVNIIMVLSVLVFTLICSLCLNSIIRCILKCYFSNSVLNNNNVSNTTTNPPARLANTGLKKKALKSFPRVTYSSELKLPGLDTECAICLSEFNNGDRLRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIQTCHKIVGSETTTTTTTQPSSVAPAETIVRIAPLEPEGMVRN 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral488g00007 221 CDD RING-H2_EL5-like 132 175 - -
Pral488g00007 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 179 IPR013083 -
Pral488g00007 221 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Pral488g00007 221 SMART ring_2 133 174 IPR001841 -
Pral488g00007 221 Pfam Ring finger domain 132 175 IPR001841 -
Pral488g00007 221 FunFam RING-H2 finger protein ATL73 93 180 - -
Pral488g00007 221 PANTHER RING-H2 FINGER PROTEIN ATL78 4 218 IPR044602 GO:0016567|GO:0016740
Pral488g00007 221 SUPERFAMILY RING/U-box 111 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral488g00007 Pral-Chr488 41006 41830 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral488g00007 14 184 C3H Transcription Factor Family AT1G20823 44.000 7.98e-41 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral488g00007 K19040 - gmx:100527126 239.195