Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4887g00066 ATGAAGATCCAATGTGATGTGTGCGAGAAAATGGAAGCTTCAGTTTTCTGTGCTGCAGATGAAGCTGCTCTCTGCCATGGATGTGATTCCAGTATCCACCATGCCAACAAGCTCGCAGGCAAACATATGCGCTTCTCTCTTCACCACCCCACCTCTAAAGATTCCGCTCTCTGTGATATCTGCCAAGAGAAGCGAGCATATCTATTTTGCAAAGAAGACAGAGCAATACTATGCAGAGAATGTGACCTTAACATCCACAGAGCCAATGAACACACCCAGAAACACAATAGATTTCTTCTCACAGGCGTGAAGCTTTCTGATTCTTCTTCCGGGGATCCGTCTTCATCGTCCTGCAATGCCGTCACCACTGAGAATAAAAGAGTCGATAATGGAAGTCGTGAGGCTAGAAGATCGTGTCGGAATTCTGACACAAACAGACCCAGATGGGATTGCAACGAGAATTTCAGTTCTTCTAATTCAGCTGTGAATTCAGATAATACTATGGTTAGTGACACAGAAGCAGTTTCGACGAGCAGTTTTTCTGAGTATTTGATTGAGACGATACCTGGGTTTTGCTTTGAAGACCTAATCGATGCTTCGTTTCCACCTCCCTAA 615 0.4455 MKIQCDVCEKMEASVFCAADEAALCHGCDSSIHHANKLAGKHMRFSLHHPTSKDSALCDICQEKRAYLFCKEDRAILCRECDLNIHRANEHTQKHNRFLLTGVKLSDSSSGDPSSSSCNAVTTENKRVDNGSREARRSCRNSDTNRPRWDCNENFSSSNSAVNSDNTMVSDTEAVSTSSFSEYLIETIPGFCFEDLIDASFPPP 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4887g00066 204 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pral4887g00066 204 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pral4887g00066 204 MobiDBLite consensus disorder prediction 105 126 - -
Pral4887g00066 204 MobiDBLite consensus disorder prediction 127 144 - -
Pral4887g00066 204 FunFam B-box zinc finger protein 21 1 98 - -
Pral4887g00066 204 CDD Bbox1_BBX-like 5 47 - -
Pral4887g00066 204 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Pral4887g00066 204 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pral4887g00066 204 CDD Bbox1_BBX-like 57 100 - -
Pral4887g00066 204 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 199 - -
Pral4887g00066 204 MobiDBLite consensus disorder prediction 105 144 - -
Pral4887g00066 204 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pral4887g00066 204 Gene3D Classic Zinc Finger 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4887g00066 Pral-Chr4887 445285 447072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4887g00066 1 202 C2C2-CO-like Transcription Factor Family AT1G75540 50.485 7.74e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral4887g00066 zf-B_box 2.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4887g00066 - - gmx:100786372 268.085