Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4887g00065 ATGAAGATCCAATGTGATGTGTGCGAGAAAATGGAAGCTTCAGTTTTCTGTGCTGCAGATGAAGCTGCTCTCTGCCATGGATGTGATTCCAGTATCCACCATGCCAACAAGCTCGCAGGCAAACATATGCGCTTCTCTCTTCACCACCCCACCTCTAAAGATTCCGCTCTCTGTGATATCTGCCAAGAGAAGCGAGCATATCTATTTTGCAAAGAAGACAGAGCAATACTATGCAGAGAATGTGACCTTAACATCCACAGAGCCAATGAACACACCCAGAAACACAATAGATTTCTTCTCACAGGCGTGAAGCTTTCTGATTCTTCTTCCGGGGATCCGTCTTCATCGTCCTGCAATGCCGTCACCACTGAGAATAAAAGAGTCGATAATGGAAGTCGTGAGGCTAGAAGATCGTGTCGGAATTCTGACACAAACAGACCCAGATGGGATTGCAACGAGAATTTCAGTTCTTCTAATTCAGCTGTGAATTCAGATAATACTATGGTTAGTGACACAGAAGCAGTTTCGACGAGCAGTTTTTCTGAGTATTTGATTGAGACGATACCTGGGTTTTGCTTTGAAGACCTAATCGATGCTTCGTTTCCACCTCCCTGTAAGAATGAGGGTAAGCATGATGCCACATTCGATGATGAATATGAAGATGTTGAAGTCAGAATGTGTTTATATCCAAAACTAAACGCAGCAAAAGAAATCTGGAAATAG 723 0.4329 MKIQCDVCEKMEASVFCAADEAALCHGCDSSIHHANKLAGKHMRFSLHHPTSKDSALCDICQEKRAYLFCKEDRAILCRECDLNIHRANEHTQKHNRFLLTGVKLSDSSSGDPSSSSCNAVTTENKRVDNGSREARRSCRNSDTNRPRWDCNENFSSSNSAVNSDNTMVSDTEAVSTSSFSEYLIETIPGFCFEDLIDASFPPPCKNEGKHDATFDDEYEDVEVRMCLYPKLNAAKEIWK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4887g00065 240 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pral4887g00065 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pral4887g00065 240 MobiDBLite consensus disorder prediction 105 126 - -
Pral4887g00065 240 FunFam B-box zinc finger protein 21 1 98 - -
Pral4887g00065 240 MobiDBLite consensus disorder prediction 127 144 - -
Pral4887g00065 240 CDD Bbox1_BBX-like 5 47 - -
Pral4887g00065 240 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pral4887g00065 240 CDD Bbox1_BBX-like 57 100 - -
Pral4887g00065 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 201 - -
Pral4887g00065 240 Gene3D Classic Zinc Finger 1 99 - -
Pral4887g00065 240 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Pral4887g00065 240 MobiDBLite consensus disorder prediction 105 144 - -
Pral4887g00065 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4887g00065 Pral-Chr4887 445285 447142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4887g00065 1 202 C2C2-CO-like Transcription Factor Family AT1G75540 50.485 3.39e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral4887g00065 zf-B_box 3.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4887g00065 - - gmx:100786372 268.085