Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4887g00059 ATGTTGAGAGAGATCACAAGAGAAGGAAAAGGAAGAGGAGGAGCAACCAAGTGCCAAGACTGTGGGAACCAAGCAAAGAAGGGTTGCGAATTCATTAGATGCAGAACTTGCTGTAACAACAAAGGCTTTCGCTGCCAAACTCATATCAGCAGCACTTGGGTTCGCACCAGTAGGAGGCGCCCTCTTCATCAACCTCAACCACAAACCCTCGCTCAAAATAATAATCCATCTCCAGGATTAGAGGAATTGAATAAGCTTCCGGCTGTGATGAGTTCGACGGCAGTGTTTCGGTGCGTTCGGGTGCGTTCTGAGGATGATACGGTTGACGAATACGCATATCAAACGTCTGTGAATGTAGGAGGGCGTGTGTTTAGTGGTGTTCTTTACGATCAAGGCCCTGGAAGCTTCTACTATAACAACGTTGTTGGTCAAAGTTCAAAAGGCCCTCTTAATCTGATTCATAATCATCCTCAAAATCAGCACGACCATTTCGTCGGCAGTTCGATGATGCAATCCCATGATGATGCTCCCACCGTGCGTCCTCCATTAATAATGCCACCCTCTTCTGCTGACCATTTTTCTTCTTCCTCCTATCCTCTTTCACTTGGAACCTTTAGGCCTGCTATATCATATTTTCCTCAACCAAAGACTTCGTAG 657 0.4612 MLREITREGKGRGGATKCQDCGNQAKKGCEFIRCRTCCNNKGFRCQTHISSTWVRTSRRRPLHQPQPQTLAQNNNPSPGLEELNKLPAVMSSTAVFRCVRVRSEDDTVDEYAYQTSVNVGGRVFSGVLYDQGPGSFYYNNVVGQSSKGPLNLIHNHPQNQHDHFVGSSMMQSHDDAPTVRPPLIMPPSSADHFSSSSYPLSLGTFRPAISYFPQPKTS 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4887g00059 218 MobiDBLite consensus disorder prediction 56 82 - -
Pral4887g00059 218 MobiDBLite consensus disorder prediction 56 80 - -
Pral4887g00059 218 Pfam Domain of unknown function (DUF702) 83 133 - -
Pral4887g00059 218 Pfam Domain of unknown function (DUF702) 15 73 - -
Pral4887g00059 218 NCBIfam LRP1 C-terminal domain 86 133 IPR006511 -
Pral4887g00059 218 NCBIfam putative zinc finger domain, LRP1 type 17 59 IPR006510 -
Pral4887g00059 218 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 9 172 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4887g00059 Pral-Chr4887 424503 425439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4887g00059 17 132 C2H2 Transcription Factor Family AT2G21400 51.908 6.92e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pral4887g00059 DUF702 5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4887g00059 - - pcin:129292149 292.352