Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4887g00055 ATGGCCAGGCCAAAAGCTCAAAGAAGAACCCTTGATTCTTACACAGTCAAACCCATAAACAAAGCCATTACGGCCGGCGACTGCGTGCTCATGCGGCCGTCCGACCCGTCAAATCCGTCCTATGTGGCTAGGATTGAGCGGATCGAAGCTGACTCGCGTGGCGCCAACGTGAAGGTCCACGTCCGGTGGTATTACCGGCCGGAGGAGTCAATCGGCGGCCGGCGGCAGTTTCACGGTTCTAAGGAGGTTTTCCTTTCTGATCATTTTGATGTTCAGAGTGCCGATACAATCGAAGGCAAGTGTACGGTTCACAGTTTCAAGAGCTACACGAAACTTGACGCTGTCGGAAACGAGGATTTCTTCTGTCGCTTCGAATACAATTCCGCCACCGGTGCTTTCAATCCTGACAGAGTAGCTGTATACTGCAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTCCAGTGTGAGAGTTGCAGTGATTGGTTTCATCCTGCCTGTATAGATATGACCGTGGAGGAAGCCAAAGGACTTGACCACTTCTTTTGTGAAAACTGTTCTGGCGAAGGCCAACAGAATGCACAAAATTCTCATACTTGA 603 0.5025 MARPKAQRRTLDSYTVKPINKAITAGDCVLMRPSDPSNPSYVARIERIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLDAVGNEDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPACIDMTVEEAKGLDHFFCENCSGEGQQNAQNSHT 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4887g00055 200 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Pral4887g00055 200 SMART BAH_4 21 137 IPR001025 GO:0003682
Pral4887g00055 200 Gene3D - 3 135 IPR043151 -
Pral4887g00055 200 Pfam BAH domain 24 136 IPR001025 GO:0003682
Pral4887g00055 200 SMART PHD_3 141 188 IPR001965 -
Pral4887g00055 200 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Pral4887g00055 200 Pfam PHD-finger 141 188 IPR019787 -
Pral4887g00055 200 SUPERFAMILY FYVE/PHD zinc finger 131 189 IPR011011 -
Pral4887g00055 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 200 IPR013083 -
Pral4887g00055 200 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Pral4887g00055 200 PANTHER OS08G0421900 PROTEIN 5 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4887g00055 Pral-Chr4887 394294 397352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4887g00055 31 139 Core DNA Replication Machinery Family AT4G14700 28.440 7.77e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4887g00055 BAH 2.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4887g00055 K25868 - jre:108986983 388.652