Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4887g00042 ATGGCTTCCTCAAGCGGAACATCTTCAGGTTCAGGTTCGTCACCTCTGGCCCAAAACTCTGGTTCCGAGGAGGATTTGCAGGTTCTGATGGATCAGAGGAAGAGGAAGAGGATGATATCGAATCGCGAGTCAGCAAGGCGATCTCGGATGAGAAAGCAGAAGCATCTGGACGATCTGGTGGCTCAAGTGGCTCAGCTCAGAAAGGAGAATCAGCAAATTCTCACAAGCGTTACTCTCACCACAGAGCAGTACTTAAGAGTTGAATCTGACAACTCTGTTCTTCGAGCTCAAGCCAGTGAGCTGAGCCACAGGCTGGAATCTCTGAACGAAATAATCGATTCCTTGAATGCCTCCAACAATGGAGCTTTTGCAAACACCTTCAACATGGAGCCCAACAATGGCTTCTTCAATCCAATGAACATGGGATATCTGAACCATCCGATAATGGCTTCTGCAGATTTGTGGCCGTAA 471 0.4798 MASSSGTSSGSGSSPLAQNSGSEEDLQVLMDQRKRKRMISNRESARRSRMRKQKHLDDLVAQVAQLRKENQQILTSVTLTTEQYLRVESDNSVLRAQASELSHRLESLNEIIDSLNASNNGAFANTFNMEPNNGFFNPMNMGYLNHPIMASADLWP 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4887g00042 156 Pfam bZIP transcription factor 33 84 IPR004827 GO:0003700|GO:0006355
Pral4887g00042 156 SMART brlzneu 29 93 IPR004827 GO:0003700|GO:0006355
Pral4887g00042 156 PANTHER BZIP TRANSCRIPTION FACTOR 44 3 152 - -
Pral4887g00042 156 Coils Coil 91 118 - -
Pral4887g00042 156 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 36 51 IPR004827 GO:0003700|GO:0006355
Pral4887g00042 156 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 31 94 IPR004827 GO:0003700|GO:0006355
Pral4887g00042 156 Gene3D - 31 85 - -
Pral4887g00042 156 CDD bZIP_plant_GBF1 34 84 IPR045314 GO:0003700|GO:0006355
Pral4887g00042 156 MobiDBLite consensus disorder prediction 1 53 - -
Pral4887g00042 156 SUPERFAMILY Leucine zipper domain 33 85 IPR046347 GO:0003700|GO:0006355
Pral4887g00042 156 MobiDBLite consensus disorder prediction 27 53 - -
Pral4887g00042 156 MobiDBLite consensus disorder prediction 1 26 - -
Pral4887g00042 156 FunFam BZIP transcription factor 31 82 - -
Pral4887g00042 156 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4887g00042 Pral-Chr4887 330702 332108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4887g00042 29 153 bZIP Transcription Factor Family AT4G34590 60.150 5.78e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pral4887g00042 bZIP_1 1.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4887g00042 K25786 - gmx:100101862 215.698