Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4887g00018 ATGCTGCGTTGTCTGAACAGTTCGGAGAATCTCGCCGAGTCCTGCTCTGATATGACATTGACATTGTTAGAAACGCAAAGAGACAGGATGAAATGGCAGCAACCGCAGTTTCATCACCATCATCAGAACCAGAACTACTTTTCTGGGAATGGGTTTGACGCTGCGTTCTCGCCTCTGCAAGTTCCGAATTCTGGGGGATTGATGGTGATCAATGGCGGCGGTGGCGGTTCTGGGCTTGGTGAGGTGGCTGCTAATGCCAGCTCGGTGAAGCCAGCCCCGGGTTGGGAAAATGGGTGGTCCGAATTGGGTAAGGCCGGCTTGCCTGGTACGGGATTTGTGTCTTCTGGATTTAACGTGAGCTCTGCAATTTCGAGGACTTCTAGCTGCCCGCCGTCTGTGGTGGCGTCGGCGGCTGCCACGCCAACGGAGAAGATGAGATCGACAAGTGGGAGAGAGAGCTTCAAGAAGAGGAAATCTGATAAAGCTCAGATCCCCAAGGTTGCAGAAAATGAGAAGAGCAAGAAAAACAAAACGAGTGTTGAGAAAGGGGAACCCAAAGTCACAAGAGATAATAATGACAAGAACAGAGAAACATCTGCAGAATCTTCGAAAGAGAATTCAAAAGCGTCTGAGGTTCAAAATCAGAAGCCTGACTACATTCATGTCCGAGCACGTCGTGGACAAGCCACTGATAGCCATAGCTTGGCAGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTACTTACAAGGTTTAGTGCCTGGTTGTAACAAAATCACAGGAAAAGCTGGAATGCTCGATGAAATCATCAATTATGTTCAATCTCTTCAACGACAAGTTGAGTTTTTGTCGATGAAACTAGCTGCTGTAAACCCAAGGATTGACTTCAACGTTGACGATCTGTTTACCAAAGAGGTTTTTCCTGCTTGTGCTTCTACGAGTTTTCCAGCCATAGATATGACACTTAACCCTGCCTATCTTCAGTTTGATCCAACACAACATGTTGCTTCATGTTCCGGATTAGATATGGGCATAAACCCTCCAGATTTGGGACTTCGAAGGACCATTAGTGCCCCTGTATCCTTGCCAAACGAAACGTTTCTTGAGCCACCATGTTTCAATCAAATTCTGCCATTTTCAAACTGTGAAGCTGATTTGCAGAACCTGTACAATGTGGCTTTTGATCAAGCCAGATCAACAACGTCGTCCTTTCCTTCTCAGCCATTCACAGGACTAATTGAAGCTAGCAATCTAAAGATGGAGATGTGA 1275 0.4612 MLRCLNSSENLAESCSDMTLTLLETQRDRMKWQQPQFHHHHQNQNYFSGNGFDAAFSPLQVPNSGGLMVINGGGGGSGLGEVAANASSVKPAPGWENGWSELGKAGLPGTGFVSSGFNVSSAISRTSSCPPSVVASAAATPTEKMRSTSGRESFKKRKSDKAQIPKVAENEKSKKNKTSVEKGEPKVTRDNNDKNRETSAESSKENSKASEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQGLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRIDFNVDDLFTKEVFPACASTSFPAIDMTLNPAYLQFDPTQHVASCSGLDMGINPPDLGLRRTISAPVSLPNETFLEPPCFNQILPFSNCEADLQNLYNVAFDQARSTTSSFPSQPFTGLIEASNLKMEM 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4887g00018 424 MobiDBLite consensus disorder prediction 123 236 - -
Pral4887g00018 424 SMART finulus 234 284 IPR011598 GO:0046983
Pral4887g00018 424 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 142 321 IPR024097 GO:0006355
Pral4887g00018 424 CDD bHLH_AtBPE_like 218 303 - -
Pral4887g00018 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 297 IPR036638 GO:0046983
Pral4887g00018 424 MobiDBLite consensus disorder prediction 123 147 - -
Pral4887g00018 424 FunFam Basic helix-loop-helix transcription factor 225 297 - -
Pral4887g00018 424 Pfam Helix-loop-helix DNA-binding domain 232 279 IPR011598 GO:0046983
Pral4887g00018 424 Gene3D - 225 298 IPR036638 GO:0046983
Pral4887g00018 424 MobiDBLite consensus disorder prediction 218 236 - -
Pral4887g00018 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 228 278 IPR011598 GO:0046983
Pral4887g00018 424 MobiDBLite consensus disorder prediction 148 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4887g00018 Pral-Chr4887 146472 149411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4887g00018 147 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 50.655 1.08e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4887g00018 HLH 9.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4887g00018 - - pcin:129293639 663.299