Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4887g00017 ATGCTGCGTTGTCTGAACAGTTCGGAGAATCTCGCCGAGTCCTGCTCTGATATGACATTGACATTGTTAGAAACGCAAAGAGACAGGATGAAATGGCAGCAACCGCAGTTTCATCACCATCATCAGAACCAGAACTACTTTTCTGGGAATGGGTTTGACGCTGCGTTCTCGCCTCTGCAAGTTCCGAATTCTGGGGGATTGATGGTGATCAATGGCGGCGGTGGCGGTTCTGGGCTTGGTGAGGTGGCTGCTAATGCCAGCTCGGTGAAGCCAGCCCCGGGTTGGGAAAATGGGTGGTCCGAATTGGGTAAGGCCGGCTTGCCTGGTACGGGATTTGTGTCTTCTGGATTTAACGTGAGCTCTGCAATTTCGAGGACTTCTAGCTGCCCGCCGTCTGTGGTGGCGTCGGCGGCTGCCACGCCAACGGAGAAGATGAGATCGACAAGTGGGAGAGAGAGCTTCAAGAAGAGGAAATCTGATAAAGCTCAGATCCCCAAGGCTGTTGCAGAAAATGAGAAGAGCAAGAAAAACAAAACGAGTGTTGAGAAAGGGGAACCCAAAGTCACAAGAGATAATAATGACAAGAACAGAGAAACATCTGCAGAATCTTCGAAAGAGAATTCAAAAGCGTCTGAGGTTCAAAATCAGAAGCCTGACTACATTCATGTCCGAGCACGTCGTGGACAAGCCACTGATAGCCATAGCTTGGCAGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTACTTACAAGGTTTAGTGCCTGGTTGTAACAAAATCACAGGAAAAGCTGGAATGCTCGATGAAATCATCAATTATGTTCAATCTCTTCAACGACAAGTTGAGTTTTTGTCGATGAAACTAGCTGCTGTAAACCCAAGGATTGACTTCAACGTTGACGATCTGTTTACCAAAGAGGTTTTTCCTGCTTGTGCTTCTACGAGTTTTCCAGCCATAGATATGACACTTAACCCTGCCTATCTTCAGTTTGATCCAACACAACATGTTGCTTCATGTTCCGGATTAGATATGGGCATAAACCCTCCAGATTTGGGACTTCGAAGGACCATTAGTGCCCCTGTATCCTTGCCAAACGAAACGTTTCTTGAGCCACCATGTTTCAATCAAATTCTGCCATTTTCAAACTGTGAAGCTGATTTGCAGAACCTGTACAATGTGGCTTTTGATCAAGCCAGATCAACAACGTCGTCCTTTCCTTCTCAGCCATTCACAGGACTAATTGAAGCTAGCAATCTAAAGATGGAGATGTGA 1278 0.4617 MLRCLNSSENLAESCSDMTLTLLETQRDRMKWQQPQFHHHHQNQNYFSGNGFDAAFSPLQVPNSGGLMVINGGGGGSGLGEVAANASSVKPAPGWENGWSELGKAGLPGTGFVSSGFNVSSAISRTSSCPPSVVASAAATPTEKMRSTSGRESFKKRKSDKAQIPKAVAENEKSKKNKTSVEKGEPKVTRDNNDKNRETSAESSKENSKASEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQGLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRIDFNVDDLFTKEVFPACASTSFPAIDMTLNPAYLQFDPTQHVASCSGLDMGINPPDLGLRRTISAPVSLPNETFLEPPCFNQILPFSNCEADLQNLYNVAFDQARSTTSSFPSQPFTGLIEASNLKMEM 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4887g00017 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 279 IPR011598 GO:0046983
Pral4887g00017 425 SMART finulus 235 285 IPR011598 GO:0046983
Pral4887g00017 425 MobiDBLite consensus disorder prediction 219 237 - -
Pral4887g00017 425 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 142 322 IPR024097 GO:0006355
Pral4887g00017 425 MobiDBLite consensus disorder prediction 148 205 - -
Pral4887g00017 425 MobiDBLite consensus disorder prediction 123 237 - -
Pral4887g00017 425 Pfam Helix-loop-helix DNA-binding domain 233 280 IPR011598 GO:0046983
Pral4887g00017 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 298 IPR036638 GO:0046983
Pral4887g00017 425 Gene3D - 226 299 IPR036638 GO:0046983
Pral4887g00017 425 MobiDBLite consensus disorder prediction 123 147 - -
Pral4887g00017 425 CDD bHLH_AtBPE_like 219 304 - -
Pral4887g00017 425 FunFam Basic helix-loop-helix transcription factor 226 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4887g00017 Pral-Chr4887 146472 149411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4887g00017 147 342 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 50.435 8.53e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4887g00017 HLH 9.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4887g00017 - - pcin:129293639 658.677