Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4887g00016 ATGGCTTCAAGCTCTCTCAGCAAAAAGGTCTCTGATTCGTCTTGGACACCTAAACAGAACAAGCTCTTTGAGAAGGCTCTTGCAAAATATGACAAGGACACTCCTGACCGTTGGCAGAATGTGGCTAAAGCTGTTGGTGCCAAATCAGCCGAGGAAGTTAAGAGACACTATGAAATCCTCTTAGAGGATCTAAGACAAATCGAATCTGGCCGTGTTCCCATCCCCAACTACAAATCCACCGGCAATGTTGATGAAGAAGAGAGGCTCATGAAGTATCTCCAGCTGAATTGA 291 0.4536 MASSSLSKKVSDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGAKSAEEVKRHYEILLEDLRQIESGRVPIPNYKSTGNVDEEERLMKYLQLN 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4887g00016 96 ProSiteProfiles SANT domain profile. 10 65 IPR017884 -
Pral4887g00016 96 ProSiteProfiles Myb-like domain profile. 7 61 IPR001005 -
Pral4887g00016 96 SMART sant 11 63 IPR001005 -
Pral4887g00016 96 Gene3D - 6 74 - -
Pral4887g00016 96 Pfam Myb-like DNA-binding domain 13 57 IPR001005 -
Pral4887g00016 96 SUPERFAMILY Homeodomain-like 13 69 IPR009057 -
Pral4887g00016 96 Coils Coil 47 67 - -
Pral4887g00016 96 FunFam Transcription factor SRM1 7 74 - -
Pral4887g00016 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 86 IPR044636 GO:0003700
Pral4887g00016 96 CDD SANT 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4887g00016 Pral-Chr4887 126241 127009 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral4887g00016 Myb_DNA-binding 7.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4887g00016 - - gmx:100798314 165.622