Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4887g00012 ATGGTGGATCGGCGAAGCCTAGTGTCTGTTGGGTTCTTATTCTCGTTGCTGTTTCAGTTCACATTTGAACAGATTGTGCCATTGAGTTCAAACATAGAGCAAGCTGCACTCTTTGACCTTAGATCGTCTCTGGGCTTGAGGAGCAAGGAATGGCCGAGAAAAGTCGACCCTTGCTCTCTCTGGAAGGGCATCACGTGCGAGAATGGTCGAGTCATTGGGATCAATATTTCTGGCTTTAGAAGAACCCGTCTTGGGAAGCTAAACCCGCAATTTTCAGTCCAAGCCTTAGCCAATTTCACTCTCTTGCAGTCTTTCAATGCCTCCAATTTTCTGCTTCCTGGTTCTATTCCTGACTGGTTTGGCCTACAGCTCTCATCTCTGAAAGTGCTTGATCTTCGGTCTTGCTCTGTTAATGGTGCTATTCCTTCCAGTCTAGGGAATTTAACGAACCTCACTAGTCTGTATTTATCTGATAATAGTATTACTGGGATAATCCCTGATAGTCTGGGTCAACTACTAAGCCTTTCAGTTCTTAACTTTTCGAGAAATCGTATTTCTGGAACCATTCCAGCATCGTTTGTCTCTCTTGGGAATCTTTCCTCTATTGACATTTCCACCAATTCTTTGTCTGGTTCAATTCCTCCTGGCATTGGGGCCCTCACAAGGTTACAGTACTTGAATCTTTCCGGTAACAGTTTAATGGCTTCGATACCCTCTCAGCTGGGAAATTTAAGTAGCCTGGTTGACCTTGATCTTAGTTTTAATTATTTGACCGGTGGGGTGCCTCCAGAATTAAGAGGGCTGAGGAGCTTGCAGAGAATGATACTAAGCAACAACACGCTTGATGGACCTTTGTCAGAGAACTTGTTTCCTACTTTGTCACAGTTGCAGGTTGTTGTGCTGAGACAAAACAATTTCACTGGTGATCTGCCTGCTGCACTGTGGTCTCTGCCGAGATTGAGCTATCTCGATCTGTCTGGTAACAATTTCACTGGTATGCTTCCAAATTCTATCAATCAGAACACGACTGCTGCTATGCTTAACATTTCCAATAATATGTTTTATGGAAGCCTTAATCCTAATATCAGAAGGTTCAGAGTCATTGACCTGTCAAGCAATTATTTTGAGGGAGATTCTAGATTTCATGCTAATGTATCTCTAAACACCAACTGCCTCCAAAACGTTTCAAATCAGAGGACGGCTGGAGAATGTGCGTTGTTTTATGCTAAGAGGGGCCTCACTTTTGACAATTTTGGACGCCCAAATTCAACTGGACCTCCTGCAACAGAAAGCTCTCGGAAGAGCAATAGATATAAGATTATATTGGCTGGAGTCTTGGGTGGATTTGGTTTGCTTGTTATTTTGTTGTTGCTATTGTTCTTGTTCCTTCTTTGTACTCGTAAGAGGCGTAATTCAAATCAAAGAGGAAATGGTGTGGGCCCTGCTCCTCCTGGGAGCAGTCCTCCAGCTCCTGGCATGTCAATCAATTTCATAAATGTGGGAGATTCATTTACAATACAGCAGCTGCTTCAGGCTACAGGTGATTTCAATGATGCAAATCTTATCAAACATGGCCACTCTGGGGATCTCTTCAATGGTGTTTTGGAAAGTGGCATACCTGTAGTCATTAAAAGGGTTGATGCGCGTGCAACTAAAAAAGATACTTTCCTAGTGGAATTGGACTTTTTCAGTAAGATTTCTCATACTAGATTTGTTCCTCTGCTGGGTCATTGCTTAGAAAATGAGAATGAGAAGTTCCTTGTTTATAAACATATGCCAAATGGGGACTTGTCAAATAGTCTCTATTACAAGAAATCTACATCTGAAGATGGTACTTTGCAGTCATTGGACTGGATAACAAGGTTGAAAATTGCTATTGGAGCTGCGGAGGCCCTATCTTATCTTCATCATGAGTGTAATCCACCCTTTGTTCATAGAGATATTCAAGCAAGCAGTATACTTCTAGATGATAAATATGAAGTTCGGTTGGGTAGTCTAAGTGAAGTCTGCACCCAAGAAGGGGATAGTCATCAAAGCAAAATTACGAGGTTGCTAAGGTTGCCCCAGTCCTCTGATCCAGGCACATCTGGTTCATCTACATCAAATTGTGCCTATGATGTTTATTGCTTTGGTAAAATATTGCTTGAGTTGGTGACTGGGAAGATGGGAATCAGTGCGTCCAGTGATGCTGAATTTAAGGAATGGTTGGATCAGATGCTGCCGTACATTAGTATTTATGACAAGGAGCTTGTCGCAAAAATCGTGGATCCTTCTCTGGTTGTAGATGAGGATTTCTTAGAGGAAGTGTGGGCTATTGCTATTGTTGCAAGGTCTTGCCTAAATCCTAAACCTTCAAGACGACCCCCCATGCGATATGTTCTCAAGGCTTTAGAAAACCCCTTTAAAGTTGTGAGGGAAGAAGGTGCCGGTTCTTCACGGCTTAGAACAACCTCTTCTAGAGGCTCTTGGAATGCTGCTTTGTTTGGTAGTTGGCGTCAGAGTTCATCTGATGTAACGGCAATCCCAGCAGCTTCTGGTACCAAAGTGGAAGGAGGGAGTAGTTTGAAGCATTCTGGAACTACCGGCTCACAGGGTAGTGGCCACAATGGCGGTGGTTCATCATCCCGGAGGCGACATTCAAACGAAATATTCCCAGAGCCATCTAACATACAGGACATAGAGAGGCCAGATCAGTAA 2697 0.432 MVDRRSLVSVGFLFSLLFQFTFEQIVPLSSNIEQAALFDLRSSLGLRSKEWPRKVDPCSLWKGITCENGRVIGINISGFRRTRLGKLNPQFSVQALANFTLLQSFNASNFLLPGSIPDWFGLQLSSLKVLDLRSCSVNGAIPSSLGNLTNLTSLYLSDNSITGIIPDSLGQLLSLSVLNFSRNRISGTIPASFVSLGNLSSIDISTNSLSGSIPPGIGALTRLQYLNLSGNSLMASIPSQLGNLSSLVDLDLSFNYLTGGVPPELRGLRSLQRMILSNNTLDGPLSENLFPTLSQLQVVVLRQNNFTGDLPAALWSLPRLSYLDLSGNNFTGMLPNSSXNQNTTAAMLNISNNMFYGSLNPNIRRFRVIDLSSNYFEGXDSRFHANVSLNTNCLQNVSNQRTAGECALFYAKRGLTFDNFGRPNSTGPPATESSRKSNRYKIILAGVLGGFGLLVILLLLLFLFLLCTRKRRNSNQRGNGVGPAPPGSSPPAPGMSINFINVGDSFTIQQLLQATGDFNDANLIKHGHSGDLFNGVLESGIPVVIKRVDARATKKDTFLVELDFFSKISHTRFVPLLGHCLENENEKFLVYKHMPNGDLSNSLYYKKSTSEDGTLQSLDWITRLKIAIGAAEALSYLHHECNPPFVHRDIQASSILLDDKYEVRLGSLSEVCTQEGDSHQSKITRLLRLPQSSDPGTSGSSTSNCAYDVYCFGKILLELVTGKMGISASSDAEFKEWLDQMLPYISIYDKELVAKIVDPSLVVDEDFLEEVWAIAIVARSCLNPKPSRRPPMRYVLKALENPFKVVREEGAGSSRLRTTSSRGSWNAALFGSWRQSSSDVTAIPAASGTKVEGGSSLKHSGTTGSQGSGHNGGGSSSRRRHSNEIFPEPSNIQDIERPDQ 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4887g00012 900 Gene3D Phosphorylase Kinase; domain 1 496 593 - -
Pral4887g00012 900 FunFam Putative LRR receptor-like serine/threonine-protein kinase 594 819 - -
Pral4887g00012 900 FunFam Leucine-rich repeat receptor protein kinase EMS1 190 288 - -
Pral4887g00012 900 ProSiteProfiles Leucine-rich repeat profile. 150 171 IPR001611 GO:0005515
Pral4887g00012 900 MobiDBLite consensus disorder prediction 853 880 - -
Pral4887g00012 900 ProSiteProfiles Protein kinase domain profile. 518 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4887g00012 900 SMART LRR_typ_2 268 292 IPR003591 -
Pral4887g00012 900 SMART LRR_typ_2 172 196 IPR003591 -
Pral4887g00012 900 SMART LRR_typ_2 317 340 IPR003591 -
Pral4887g00012 900 SMART LRR_typ_2 220 244 IPR003591 -
Pral4887g00012 900 SMART LRR_typ_2 148 171 IPR003591 -
Pral4887g00012 900 Gene3D Ribonuclease Inhibitor 289 392 IPR032675 -
Pral4887g00012 900 Gene3D Transferase(Phosphotransferase) domain 1 594 811 - -
Pral4887g00012 900 MobiDBLite consensus disorder prediction 475 496 - -
Pral4887g00012 900 Gene3D Ribonuclease Inhibitor 30 189 IPR032675 -
Pral4887g00012 900 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 30 189 - -
Pral4887g00012 900 Pfam Protein tyrosine and serine/threonine kinase 524 796 IPR001245 GO:0004672|GO:0006468
Pral4887g00012 900 Pfam Leucine rich repeat 222 281 IPR001611 GO:0005515
Pral4887g00012 900 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Pral4887g00012 900 Pfam Leucine rich repeat 286 330 IPR001611 GO:0005515
Pral4887g00012 900 MobiDBLite consensus disorder prediction 844 900 - -
Pral4887g00012 900 Gene3D Ribonuclease Inhibitor 190 288 IPR032675 -
Pral4887g00012 900 SUPERFAMILY Protein kinase-like (PK-like) 496 799 IPR011009 -
Pral4887g00012 900 FunFam Predicted protein 488 593 - -
Pral4887g00012 900 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 196 800 - -
Pral4887g00012 900 SUPERFAMILY L domain-like 92 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4887g00012 Pral-Chr4887 85149 91145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4887g00012 33 691 Miscellaneous Gene Families AT2G16250 57.744 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Pral4887g00012 PK_Tyr_Ser-Thr 8.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4887g00012 - - qsa:O6P43_011595 1241.87