Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4886g00066 ATGATGCAGCCTGGTCCTGGCATGGCTCCCCCAACCATGGGCCAACAGCCTCCTCAGCAATACCCGCAGCAGCAACATCCCTACATGATGATGCCACCGCAGGCTCAGGCGCCACCGATGTGGGCACCCTCTGTTCAACCACCGCCACAGTCGGTCGTTCCACCGCCGACGACTCAAGCCGTCCAACCCGCAAGCGCGGATGAGGTCCGTACTCTTTGGATCGGTGATTTGCAGTTCTGGATGGACGAGAGCTATCTGTACTCTTGTTTTGCTCACACTGGCGAGGTAGGCTCGGTGAAAGTTATTAGAAACAAGCAAACTAATCAATCTGAAGGTTATGGGTTTATTGAGTTTTTCACACGCGCGGCGGCTGAGAAAGTGCTGCAATCATATAATGGAACCATTATGCCGAATGGTGGGCAAACCTTTAGATTGAACTGGGCATCTTTTAGCTCGGGTGAGAAGCGGCACGATGATACTCCAGATTACACAATATTCGTTGGAGATTTAGCTGCAGATGTTACAGATTACATGCTGCAGGAGACGTTTCGGGCTAGGTATCTCTCAGTTAAAGGTGCAAAAGTTGTGATAGACAGACTCACTGGGAGGACAAAGGGTTATGGTTTCGTTAGGTTTGGAGATGAAAATGAACAAATGCGAGCTATGACTGAGATGCAAGGTGTATTATGTTCAACGAGACCCATGCGGATTGGACCAGCCACTAACAAAAACCCTGGCACTCAGCCTAAAGCTTCATATCAGAATCCTCCAGTGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGGAATTTGGATCCTAATGTAACGGATGATCATCTTAGGCAAGTTTTTGGCCAATATGGCGAGTTAGTACATGTTAAGATTCCCGCAGGCAAACGATGTGGGTTTGTTCAGTTTGCTGACAGGAGCTGTGCAGAAGAGGCACTGAGGACATTAAATGGAACAGTATTGGGTGGGCAGAATGTTCGTCTCTCTTGGGGCCGGAGTCCTTCAAACAAACCGACTCAGCCAGATCCAAACCAGTGGAATGGTGCTGCTGGTGGGTATTACGGATATGCTCAGGGGTACGAGAACTATGGATATGCTCCTGCTACCGCACAGGATCCTAACATGTATGGAAGCTATCCTGCAGGGTACACCAATTACCAACCACCACAGCAACAGCAGCAGCTAGGATATAGTTGA 1218 0.486 MMQPGPGMAPPTMGQQPPQQYPQQQHPYMMMPPQAQAPPMWAPSVQPPPQSVVPPPTTQAVQPASADEVRTLWIGDLQFWMDESYLYSCFAHTGEVGSVKVIRNKQTNQSEGYGFIEFFTRAAAEKVLQSYNGTIMPNGGQTFRLNWASFSSGEKRHDDTPDYTIFVGDLAADVTDYMLQETFRARYLSVKGAKVVIDRLTGRTKGYGFVRFGDENEQMRAMTEMQGVLCSTRPMRIGPATNKNPGTQPKASYQNPPVAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRTLNGTVLGGQNVRLSWGRSPSNKPTQPDPNQWNGAAGGYYGYAQGYENYGYAPATAQDPNMYGSYPAGYTNYQPPQQQQQLGYS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4886g00066 405 MobiDBLite consensus disorder prediction 385 405 - -
Pral4886g00066 405 SUPERFAMILY RNA-binding domain, RBD 252 367 IPR035979 GO:0003676
Pral4886g00066 405 MobiDBLite consensus disorder prediction 1 17 - -
Pral4886g00066 405 MobiDBLite consensus disorder prediction 1 64 - -
Pral4886g00066 405 SUPERFAMILY RNA-binding domain, RBD 51 148 IPR035979 GO:0003676
Pral4886g00066 405 Gene3D - 251 347 IPR012677 -
Pral4886g00066 405 Gene3D - 154 250 IPR012677 -
Pral4886g00066 405 FunFam Polyadenylate-binding protein RBP45C 247 374 - -
Pral4886g00066 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 150 IPR000504 GO:0003723
Pral4886g00066 405 MobiDBLite consensus disorder prediction 384 405 - -
Pral4886g00066 405 FunFam Polyadenylate-binding protein RBP45C 155 246 - -
Pral4886g00066 405 SUPERFAMILY RNA-binding domain, RBD 157 250 IPR035979 GO:0003676
Pral4886g00066 405 Gene3D - 9 153 IPR012677 -
Pral4886g00066 405 MobiDBLite consensus disorder prediction 32 56 - -
Pral4886g00066 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 228 IPR000504 GO:0003723
Pral4886g00066 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 137 IPR000504 GO:0003723
Pral4886g00066 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 333 IPR000504 GO:0003723
Pral4886g00066 405 FunFam Polyadenylate-binding protein RBP45 10 154 - -
Pral4886g00066 405 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 62 351 - -
Pral4886g00066 405 CDD RRM1_SECp43_like 71 151 - -
Pral4886g00066 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 340 IPR000504 GO:0003723
Pral4886g00066 405 CDD RRM2_SECp43_like 162 241 - -
Pral4886g00066 405 SMART rrm1_1 269 336 IPR000504 GO:0003723
Pral4886g00066 405 SMART rrm1_1 164 238 IPR000504 GO:0003723
Pral4886g00066 405 SMART rrm1_1 71 146 IPR000504 GO:0003723
Pral4886g00066 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 242 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4886g00066 Pral-Chr4886 425488 429437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4886g00066 137 333 Eukaryotic Initiation Factors Gene Family AT4G34110 28.218 4.41e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4886g00066 - - aprc:113864230 596.66