Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4886g00062 ATGGACGGCGATGAACCTCCTTGTCCATCACCGCATGTTTCGTCATCTTCGATCTTCAAGGACATATCCAATTTCAAAACTCCGAAACGTCCCTCTTACAACCTCAACTTCCAATCCCCTTGTCAGAAGTTCTTCACTGCCTCCAAGCAAACGCCGCACTCGTCAGCGTTCCGTCGCCGGCCGTCTGTCGCTCCACCATCTTCAGCTCGAACAAAGAAGTCCGCCGCGGCAGCCAGGAAACTCAAGGCATTTGAACTTGAGCAGTCTCAATCCTCGAGAAAAGCTCAAATCAAGAAAGAACAGTCTCTTAAATCTTTAGCCAAGTCTATCACTGTTTGGCTTAATTTTTTGTTCGAAAACCCTGCTACGTGCGGATGTAACTTGTCCATCGGCGGTATTCGGATGGGGGATAAGCATTCTGAAGCGGAGGCTACGAAGGGCAAGAGGGATAGCGGTCCTGGGATTTCCATTGGGGTCGATAAAGCCTGGCGTACTCCGAAGAGGCAGAGGAAGATTTGGTCGCGGGCAGAGGACAATGTTGGTAATGAAAATACGCCCTTGGAGTTGCCAAATTCTATGTTTTCGCACTTGAGGGAATCTCTGGAGGATGTCTGCAGTTTCGATGATTTGAAGCAGCGAATGAGAATTTATCTGAACTTGGGAAGTTGTAAAGAAATTTTTGAAGTTATGAATCAAGTCACCAAGAATATCGATGAAGGCAGGTTAAAGTTGAAGCCACATTGCCCCATAGTGACAGATCTCGGATTGAAAAATAAAGCCACAAGAATTCTAATGTCTTATAATCCCATTTGGCTCCGGATTGGATTATATATAATTTTTGGTGGTGACTCCTTGGTGCCTAACGGGGATGATGATTCCGAACAAGAAATCACGTTTTTGAAAATGGTTATTGACAAGCAATTTTTTTCACATGCGGGTTTGGCAAAAGCATATGCTTATAACAAGATGGTTGACGGCCTATACAGGCCAGGGTACTATGAGAATTTGGGGAATGTGATTTTAAAGAGAATATTATTGATTGTGCTTACTCTGGATAGAATTAAATCTCAGAGCTGCCTTTCACTTAAGTATGGTATCGATGGATTGGATGGGGGTTCCCCTTTGTTGTTTAAAGCAGATTCTTGGATTAAATCAAGTGGTCAGGTCATCAGTGAATTCCTATCGTCAGAGGTAATGCACGGAGAAGGAAATCTTCTGGCTCATTTAGTAATAATAGGTTACAAAGTATCTCATCAACAGGGGCCACTGGTCGAGTATGATTTCAAGGTCAGAGATTTATTTGTAGATCTCCAAGATGGATTAAAGCTCTGTAGAGCTATACAGCTTTTGCAGCATGATTCTTCCATCCTCACGAAAATCGTAGTTCCCTCAGACACTTATAAGAAGAACTTGGCCAACTGTGGCCTTGCGCTACAATACCTTAAGAAAGCTGGTGTTTTGCTACACGATGAGGATAACATGATGATTGAAGCAGAGGACGTTGCCAATGGAGACAAAGAACTTGTTCTCTCGTTGCTGTGGAATATCTTTGTTCATTTGCAGCTACCTCTTCTGGTTGATAAATCATGTTTACTAGAGGAAATTGGTAAAATTCGAGGACTTGGTGTGAATGCCATTAACAATGCAAATTCAAGTTCATTGGAATTGCTTTTGAATTGGATTCAGGCAGTTTGTGCAAATTATGATTGTGGGGTTGACAATTTTGATTCATTAGTTGATGGAAAAGCTATCTGGTGCTTACTTGATTATTATTTCCAGAAAGAATTTCATAGTTCCTGTTTAATGAAGGAAGTCGATCCAAAGAGTGGCAAGGAATCAATAATGTCTGTCAACGATTATTCAGATGCAGTGTACAATTTTATATTATCACAGAGGTTGACAACATTATTAGGAAATTTTCCGGAGGTACTTCAAATAAGCGACCTACTCGAATATAACGGCGCTTCCAGTGATCGAAGTGTAGTGATATTGTTGGTTTTCCTTGCAAGGCAATTATTTGTCAAGAAAAATGATCAATTAAATTTCCATAAGCTCCTTGGTTGTGATTGCCAAAGTCTGTACCGGAAACATTTGAGGATGGAGCAGTGTCTTTCTAATACTGGAGCAGCACACAAGCCGGACGCTTCTGATGTGCATGACAACGAAGATGCTGCAAAAAAATTCAAGGCCATCCAGGCTTGGTGGCAACTCATGGCTGAAAGAAATCAGAAATCTTATATGAAACCGGCTGCGTGTAGACCCATTGAAAGCAGCGCCAACGTCAGAAAAGAAACCGCTGCAATAACAATACAATCACGTTTCAGAAGATTGGTTGCTCGTCGCACGTTTCTTAAAATGCATAATGCTGTCTCTCTTTTGCAAACTGTTTTCCGAGCTTGGCTAGAAGTGAGGCAGGAGTCATCGTTCTCCTTCGTCCAAGGTCAAAATTTTTCATGTGCGATACACAAGAGACCAGAAACACATAGGAGAGATGCCATGTTTTTCGTTCAAAGGCACTCTTTCTTGAAGCTAAAGAGGTCCGCATTGCTTATCCAGCAAGCAGTGCGGAGTTGGCTCTCTTGGAGGCATCAGCAGGAATGCAGTATACTTCCTCAATTGACGGCTTCAGATCCAGTGGCTGCTGCCACTACTGTTCAGAAATTTGTTCGTGGTTGGATGGCACGATCTAGATATAATCACATGCTTGAGCAGCAAGAGAAAGCTTCGTATTTGTACTCACAAAAGGTTATGTTTGAACTTCAAACGAAAGCGGCCATCAGGATTCAGCTTGCTTGGAAGAGGTATATGTGCTGCAAGTTTACTCAGAGGCACTTCTGTGCGACAATAATTCAAAGCAGCTTTCGTAGGTGGCGGTTAAGAAGAATATATTTGAATCAGATTCAAGCTGTTCTGAAAATCCAATGTTATTTTCGAATGTCTGCTAGTGTAAAGACTTTTCAACACTTCAAAATGGCATTTAAGGCAGCCATTGTCATTCAATCGTTCACACGTGCATGGATTGCACGGAAGGAAGCTTATGCACGTAGAAGTCGCATCGTTTCAATTCAAAGGCATTGCCGCGCTTGGCTGGCGAGAAGGGACTTCATGTGCCAAAGAGGCGCTGCAATGAAGATCCAGACCGTCATTCTTAGTCTGAAGTACCAGAAGGCTCTCAATTGTCGGAAAGATGCAGTGCTGCAGATTCAGCGTTTTATTAGGGGGCATTTATCACGAAATAGACTCTTGGGGGGTGCATCTCGTCAACGCGCAATGGTTCCAAGTGGTTGCATTTTAAGATCAGCTGGTTACTCTAGTTTTCAACTGGAACTATATCTGTGTTCTGTTCTGAAATTGCAGCGGTGGTGGAGGGGTGTCTTGCTACACAAGTTAAGAACAAAGTCTGTAGTTATAATCCAATCGTGTACTCGGGGGTGGATTGCTAGGCGAATGGCAACTGTTCGCAGACACCATGTTATTGTCATTCAATCCCACTGGAAAGGTTACCTTGCTCGGAAGGAGTCAAGAGAGCAGCTGCGAGACTTGCGCTTGAGGGTAAAGAAGTCTGCCAGAAATGTGGACGATAGCAAGCGTCTCATAAACAGACTTCTCCTGGCGCTTTCAGAGCTGCTTCATATGAAGAGTGTCAGTGGCATCCTTCATACTTGTGCAACGTTGGACATGGCTACGGAACATTCCCAGAAATGTTGTGAAGAACTTGTCGCCGCAGGGGCTATTGACAAGTTGCTGACGCTTATTCGCTCAGTAAGCCGAAGTATACCTGATCAGGAGGTTCTTAAGCATGCTCTGTCAACTCTCCGAAATCTAGCCCGCTACCCTCACCTACTTGAATTGCTGATCCAAAGCAACGGTTCCATGCAGACAATCCTCTGGGAATTACTGAGGAATAAGGAGGACAGTTACTTTATTGCTTCGGAACTTTTGATGAAGATATCTTCAACTCCTAAAGGTGTTGAATCGTTACGCAAGTTACCTGCTCTTGTAAAACGACTGCATGCTCTTGTTGAGGAGCTTACACGGAAGGGAATCTACGAGAAAAGAAATGGCAGAGCTCCTAGTGCAGTAATAAGAGAGAATAGAGAGAGGAGATTGAAGGAGGCTGCTGGGATTCTCAAACTGATAACAAATGCCTAA 4152 0.433 MDGDEPPCPSPHVSSSSIFKDISNFKTPKRPSYNLNFQSPCQKFFTASKQTPHSSAFRRRPSVAPPSSARTKKSAAAARKLKAFELEQSQSSRKAQIKKEQSLKSLAKSITVWLNFLFENPATCGCNLSIGGIRMGDKHSEAEATKGKRDSGPGISIGVDKAWRTPKRQRKIWSRAEDNVGNENTPLELPNSMFSHLRESLEDVCSFDDLKQRMRIYLNLGSCKEIFEVMNQVTKNIDEGRLKLKPHCPIVTDLGLKNKATRILMSYNPIWLRIGLYIIFGGDSLVPNGDDDSEQEITFLKMVIDKQFFSHAGLAKAYAYNKMVDGLYRPGYYENLGNVILKRILLIVLTLDRIKSQSCLSLKYGIDGLDGGSPLLFKADSWIKSSGQVISEFLSSEVMHGEGNLLAHLVIIGYKVSHQQGPLVEYDFKVRDLFVDLQDGLKLCRAIQLLQHDSSILTKIVVPSDTYKKNLANCGLALQYLKKAGVLLHDEDNMMIEAEDVANGDKELVLSLLWNIFVHLQLPLLVDKSCLLEEIGKIRGLGVNAINNANSSSLELLLNWIQAVCANYDCGVDNFDSLVDGKAIWCLLDYYFQKEFHSSCLMKEVDPKSGKESIMSVNDYSDAVYNFILSQRLTTLLGNFPEVLQISDLLEYNGASSDRSVVILLVFLARQLFVKKNDQLNFHKLLGCDCQSLYRKHLRMEQCLSNTGAAHKPDASDVHDNEDAAKKFKAIQAWWQLMAERNQKSYMKPAACRPIESSANVRKETAAITIQSRFRRLVARRTFLKMHNAVSLLQTVFRAWLEVRQESSFSFVQGQNFSCAIHKRPETHRRDAMFFVQRHSFLKLKRSALLIQQAVRSWLSWRHQQECSILPQLTASDPVAAATTVQKFVRGWMARSRYNHMLEQQEKASYLYSQKVMFELQTKAAIRIQLAWKRYMCCKFTQRHFCATIIQSSFRRWRLRRIYLNQIQAVLKIQCYFRMSASVKTFQHFKMAFKAAIVIQSFTRAWIARKEAYARRSRIVSIQRHCRAWLARRDFMCQRGAAMKIQTVILSLKYQKALNCRKDAVLQIQRFIRGHLSRNRLLGGASRQRAMVPSGCILRSAGYSSFQLELYLCSVLKLQRWWRGVLLHKLRTKSVVIIQSCTRGWIARRMATVRRHHVIVIQSHWKGYLARKESREQLRDLRLRVKKSARNVDDSKRLINRLLLALSELLHMKSVSGILHTCATLDMATEHSQKCCEELVAAGAIDKLLTLIRSVSRSIPDQEVLKHALSTLRNLARYPHLLELLIQSNGSMQTILWELLRNKEDSYFIASELLMKISSTPKGVESLRKLPALVKRLHALVEELTRKGIYEKRNGRAPSAVIRENRERRLKEAAGILKLITNA 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4886g00062 1383 Coils Coil 1171 1191 - -
Pral4886g00062 1383 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1243 1290 IPR000225 GO:0005515
Pral4886g00062 1383 ProSiteProfiles IQ motif profile. 994 1021 IPR000048 GO:0005515
Pral4886g00062 1383 ProSiteProfiles IQ motif profile. 1061 1090 IPR000048 GO:0005515
Pral4886g00062 1383 Gene3D - 415 521 IPR036872 -
Pral4886g00062 1383 ProSiteProfiles IQ motif profile. 880 907 IPR000048 GO:0005515
Pral4886g00062 1383 Gene3D - 548 674 IPR036872 -
Pral4886g00062 1383 CDD CH_ASPM_rpt1 405 516 - -
Pral4886g00062 1383 SUPERFAMILY Calponin-homology domain, CH-domain 322 603 IPR036872 -
Pral4886g00062 1383 ProSiteProfiles IQ motif profile. 763 791 IPR000048 GO:0005515
Pral4886g00062 1383 MobiDBLite consensus disorder prediction 10 25 - -
Pral4886g00062 1383 ProSiteProfiles IQ motif profile. 1131 1158 IPR000048 GO:0005515
Pral4886g00062 1383 ProSiteProfiles IQ motif profile. 1015 1044 IPR000048 GO:0005515
Pral4886g00062 1383 SMART arm_5 1232 1277 IPR000225 GO:0005515
Pral4886g00062 1383 Pfam Armadillo/beta-catenin-like repeat 1232 1277 IPR000225 GO:0005515
Pral4886g00062 1383 Pfam IQ calmodulin-binding motif 994 1011 IPR000048 GO:0005515
Pral4886g00062 1383 Pfam IQ calmodulin-binding motif 1132 1149 IPR000048 GO:0005515
Pral4886g00062 1383 Pfam IQ calmodulin-binding motif 1063 1081 IPR000048 GO:0005515
Pral4886g00062 1383 Pfam IQ calmodulin-binding motif 946 963 IPR000048 GO:0005515
Pral4886g00062 1383 Pfam IQ calmodulin-binding motif 880 898 IPR000048 GO:0005515
Pral4886g00062 1383 Pfam IQ calmodulin-binding motif 1158 1173 IPR000048 GO:0005515
Pral4886g00062 1383 Pfam IQ calmodulin-binding motif 1114 1129 IPR000048 GO:0005515
Pral4886g00062 1383 Pfam IQ calmodulin-binding motif 1018 1035 IPR000048 GO:0005515
Pral4886g00062 1383 Pfam IQ calmodulin-binding motif 766 783 IPR000048 GO:0005515
Pral4886g00062 1383 Gene3D - 1185 1382 IPR011989 -
Pral4886g00062 1383 ProSiteProfiles IQ motif profile. 1154 1182 IPR000048 GO:0005515
Pral4886g00062 1383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1114 1177 IPR027417 -
Pral4886g00062 1383 PANTHER UNCHARACTERIZED 39 865 - -
Pral4886g00062 1383 ProSiteProfiles Calponin homology (CH) domain profile. 399 521 IPR001715 GO:0005515
Pral4886g00062 1383 SUPERFAMILY ARM repeat 1200 1342 IPR016024 -
Pral4886g00062 1383 MobiDBLite consensus disorder prediction 48 74 - -
Pral4886g00062 1383 SMART iq_5 1014 1036 IPR000048 GO:0005515
Pral4886g00062 1383 SMART iq_5 1130 1152 IPR000048 GO:0005515
Pral4886g00062 1383 SMART iq_5 877 899 IPR000048 GO:0005515
Pral4886g00062 1383 SMART iq_5 920 941 IPR000048 GO:0005515
Pral4886g00062 1383 SMART iq_5 1060 1082 IPR000048 GO:0005515
Pral4886g00062 1383 SMART iq_5 843 865 IPR000048 GO:0005515
Pral4886g00062 1383 SMART iq_5 1153 1175 IPR000048 GO:0005515
Pral4886g00062 1383 SMART iq_5 965 987 IPR000048 GO:0005515
Pral4886g00062 1383 SMART iq_5 785 807 IPR000048 GO:0005515
Pral4886g00062 1383 SMART iq_5 762 784 IPR000048 GO:0005515
Pral4886g00062 1383 SMART iq_5 942 964 IPR000048 GO:0005515
Pral4886g00062 1383 SMART iq_5 991 1013 IPR000048 GO:0005515
Pral4886g00062 1383 MobiDBLite consensus disorder prediction 1 25 - -
Pral4886g00062 1383 Gene3D - 762 809 - -
Pral4886g00062 1383 Gene3D - 944 992 - -
Pral4886g00062 1383 Gene3D - 1128 1182 - -
Pral4886g00062 1383 Gene3D - 993 1039 - -
Pral4886g00062 1383 Gene3D - 879 943 - -
Pral4886g00062 1383 Pfam Calponin homology (CH) domain 429 520 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4886g00062 Pral-Chr4886 411242 421310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4886g00062 1009 1189 Myosins gene family AT5G43900 28.042 3.82e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4886g00062 K16743 - jre:108981478 1605.88