Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4886g00045 ATGGACTCTCAAAATTTCTTATTTTCCCGAGAAAACCCTAGACCCCTCTCGTTCTCCACTGCTTCAATTGTCTCTTCAAAACCCAATATCCCCAACGAGATCGCTCAGAAGCCTTCCGCTCCGATTCTAGTGGGCCGGTTCAAGGCTTTGCTAAAGGAACGCGAGGATGAATTCAGGGCGTCCTCTGGTGATGACGCGCCGGTGCCGCCCCCTAGCACTGAAGAAATTGTGCAATTTTACCAATTGCTGTTGTCGGACCTCACTTGCAACTTGAAGCCTATCATTACGGATCTAACCATTATTGCCGAGCTTCAGGTTGAGCATGCCAGAGGCATCGCCGATGCAATTTGCACTCGGATTCTTGAGGTGCCTGCAGATCAAAAGCTGCCATCCCTCTATCTTTTGGACAGTATTGTGAAGAATGTTGGTCAGGAATATATTAGATACTTCTCTTCACGTCTGCCTGAAATTTTCTGTGAGGCATACAGGCAGGTTCATCCTAAGCTGCATAATGATATGCGCCGTCTCTTTGGCACCTGGTCAAATGTTTTCCCACCTTCTGTCCTACGCAAGATTGAAGCTAAACTCCAGTTTTCTCAAGCAGTTAATAGTCGTTCATCTATCTCTGATCCCCTTAGGGCGTCTGAATCTCGTCAAGCAACTCATGGCATACATATCAATCCGAAGTACTTGCAGCAGTTGGAACATTCTTCTATAGATAGTGTTGGAGATGAAAAATTGGAATCAACAGTAAATTTGGGTCTTGCAAATTTTGGCCGTGGAGCTAAGATGCATCAACCTTTATCTAGCAGGCTTGGGAGATCTTTGCCTTCAGGAATCAGACTTGATAGGCCTCTTTCAGCAACCAAAGATGAGTGTGCAGTTGACAATTCTTCTAGCCGGATAGTAGAGAGAGATCCTCTTTCTCATCCTGCATTTGATTATGGAGTTGGTAAAGCAGGAAGTAGAGGTGAAGAGTTGAGTGGGTGTGAACCAAAACATCATACTGATGATGGTCGGAACCAGTTTCAAGTTTCTATGTCGGGTAGTCTTAGTAATGGGCATCAGCGTCAAAATCTTAAAGCTTTAATAGATGCATATGGGAGCGATAAAAATGATGAAACCTTCAATAATAAGCCTTTGTTTGTTGAACGTCAGGACATAAATGGTTTAAACAAAGTTGTGTCAGCATCATGGCAAAACACTGAAGAGGAGGAATTTGATTGGGAAGATATGAGTCCAACATTAGCAGACCATAGTAGGAATAATGATTTCTTACCATCAAGTATTGGTTTCTCCAGGGAAAAGCCTGTTATTAGTGCGGCTACTTCAGAGCGAAATACTAGGCGAAGTTGGTCTAGTCGGTCGCAGCTACCACCAATGGACGATTCCTCTGTCATAGCTGGAGATAAATTTGTTTATTCAAGTTATGGCCGTGGATCACCAGTTAAGGCATCTGGATACCAAAATCAGACAAACCGAGGCTTAAGCTCCCGTCCACCTCTTGATGCTTGGAATATTAGAGGTCGAGCAAGCAACATTCAGATATCTCCTGTCAGTAACATTCAAAATAGTGATATAAACCCATATGGGACGCGGTCTGCTTTGTCTAGAATGGGTTCCGCCCTTGAATCTAATGTGGAGATTCGTCCAACAGCTTTACCAGCATCTCTTGGAATGAGGCCCCCAGTTAATGTTCATGCTGTTCGTCCTCCAACCTTAAACCATACATTTCCCTTGGATAAACATGTTAAGAGTCAGTTTGAGCCAATACATGCTAGCAGCAGCATTGTAAATAATGGTCAAAATAATTCTTCGTTTTTGGACAGTGTTGAGAACAAGGTTACAGGTTTATCAAAGCTGCATCAGCTGCCAACCCAGCTAGCTGGGCAGATTCCATTTAACCAGAAAAACCATGGACAAGCACCACAAATTTTTCACTCTCCAGATGTGCAAGAGAAGTTACTTAGATCACAAGCTCCAGCAGCTTTGCAGTTTAGTCATGGAAGCTCTTTGCTAGGACATACTGATGCTCTAAGTACAGCCATGCTAAACTCACTTCCTGCCGTACAATTCCCTATTCCAGTCCAAAACATTGCAAATAACTCTTCTCAATTACGGGGGGGAAACTTGATGCCTTTACCTCCAGTCTCCCATCCAGCTATGTCACTAACAATACCTCATTCAAATGCTGGTCCTATTGGGTCAAGCCAACAACCAGGTGGTGCATTTTCTGGTTTGATTAATTCACTTATGGCCCAAGGTTTGATATCATTGACTAATCAGCCTGCCAAACAGGATTCTGTTGGAACTGAGTTTAATCCAGATGTTCTAAAGATTCGTCATGAGTCTGCAATCAATGCCTTATATGGCGATCTTCCTAGACAATGCACTACTTGTGGCCTTCGGTTCAAGTGCCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTTACTAAGAACCGGATGTCTAAAAACCATAAGCAGAAGCCCTCTCGCAAGTGGTTTGTGAGTGAGAGTATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAATCAGTCCCTGGTTTTTTGCCAAGTGAGATTTTAGAGGAAAAAAGGGATGACGAAGAGTTGGCTGTGCCAGCTGATGAGGATCAGAATACATGTGCATTATGTGGTGAGCCTTTCGATGAGTTTTACAGTGATGAAACTGAGGAATGGATGTACAGAGGAGCTGTGTATAACAATGCACCGAAGGGAACAGTAGCAGGCATGGATAGGTCGCAGTTAGGCCCCATTGTTCATGCGAAGTGCAGATCTGAGTCAAGTGTGGTCCCATCCGAAGATAATGGACTGGATGAAAGGGCCAGCATAAAATTGTCAATAATATGTTTCTGGGATATGCTAGGGCGTCCCTCCGTAAATGTCCAAAGTAGGCAATTTTAA 2928 0.4385 MDSQNFLFSRENPRPLSFSTASIVSSKPNIPNEIAQKPSAPILVGRFKALLKEREDEFRASSGDDAPVPPPSTEEIVQFYQLLLSDLTCNLKPIITDLTIIAELQVEHARGIADAICTRILEVPADQKLPSLYLLDSIVKNVGQEYIRYFSSRLPEIFCEAYRQVHPKLHNDMRRLFGTWSNVFPPSVLRKIEAKLQFSQAVNSRSSISDPLRASESRQATHGIHINPKYLQQLEHSSIDSVGDEKLESTVNLGLANFGRGAKMHQPLSSRLGRSLPSGIRLDRPLSATKDECAVDNSSSRIVERDPLSHPAFDYGVGKAGSRGEELSGCEPKHHTDDGRNQFQVSMSGSLSNGHQRQNLKALIDAYGSDKNDETFNNKPLFVERQDINGLNKVVSASWQNTEEEEFDWEDMSPTLADHSRNNDFLPSSIGFSREKPVISAATSERNTRRSWSSRSQLPPMDDSSVIAGDKFVYSSYGRGSPVKASGYQNQTNRGLSSRPPLDAWNIRGRASNIQISPVSNIQNSDINPYGTRSALSRMGSALESNVEIRPTALPASLGMRPPVNVHAVRPPTLNHTFPLDKHVKSQFEPIHASSSIVNNGQNNSSFLDSVENKVTGLSKLHQLPTQLAGQIPFNQKNHGQAPQIFHSPDVQEKLLRSQAPAALQFSHGSSLLGHTDALSTAMLNSLPAVQFPIPVQNIANNSSQLRGGNLMPLPPVSHPAMSLTIPHSNAGPIGSSQQPGGAFSGLINSLMAQGLISLTNQPAKQDSVGTEFNPDVLKIRHESAINALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNHKQKPSRKWFVSESMWLSGAEALGTESVPGFLPSEILEEKRDDEELAVPADEDQNTCALCGEPFDEFYSDETEEWMYRGAVYNNAPKGTVAGMDRSQLGPIVHAKCRSESSVVPSEDNGLDERASIKLSIICFWDMLGRPSVNVQSRQF 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4886g00045 975 MobiDBLite consensus disorder prediction 319 338 - -
Pral4886g00045 975 Gene3D - 70 198 IPR008942 -
Pral4886g00045 975 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 62 947 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Pral4886g00045 975 Pfam CID domain 92 191 IPR006569 -
Pral4886g00045 975 SUPERFAMILY ENTH/VHS domain 72 197 IPR008942 -
Pral4886g00045 975 MobiDBLite consensus disorder prediction 440 461 - -
Pral4886g00045 975 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Pral4886g00045 975 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Pral4886g00045 975 SMART 558neu5 75 197 IPR006569 -
Pral4886g00045 975 CDD CID_Pcf11 77 197 IPR047415 -
Pral4886g00045 975 ProSitePatterns Zinc finger C2H2 type domain signature. 797 817 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4886g00045 Pral-Chr4886 282517 289144 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4886g00045 734 937 C2H2 Transcription Factor Family AT4G04885 79.512 2.27e-109 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4886g00045 K14400 - gmx:100794796 1157.51