Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4886g00043 ATGTTTCAACAGCCAAACATGTTTGATTCTAATGTGCTTGATGTGTCCCACAAGATGTCATCGGACAGTGATCTAGTGGGAAGGAAGACCAATGACGACGATTACGAGACCAAATCGGTCACTGAAACAACCATGGAAGCTCCTTCAGGTGACGACCAAGACCCCGACCAACGTCCCAAAAGGAAGCGCTACCACCGCCACACCCAGCGCCAAATACAAGAATTGGAATCTTTCTTCAAGGAGTGTCCCCACCCAGATGACAAACAAAGGAAAGAGCTGAGCCGTGAACTGGGATTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAAATGAAGGCACAACATGAACGCCATGAGAATTCCATTTTGAAGGCTGAGAATGAAAAGCTTCGAGCTGAGAACAGTAGGTACAAGGACGCCCTAAGCAACGCTTCATGCCCCAACTGTGGAGGCCCTGCAGCTCTTGGTGAAATGTCCTTTGACGAGCAGCATCTCAGGATTGAGAATGCCCGCTTAAGAGAAGAGATAGACAGAATATCAGGAATTGCGGCCAAATACGTTGGAAAGCCAGTGACATCTTTTTCACACTTTTCATCTCATCACCTTCCTTCACGCTCGCTGGAAGATCTTGGAGTTGGCAGTAACTTTGTGTCACAGTCAGGGACAATAGGGGAAATGTACAGTGTGAGTAACAGTGACCTTATTAGGTCACTACCAATGCCTTCTGAAGCTGACAAGCCCATGATTGTAGAGCTTGCTGTTGCGGCAATGGAGGAACTCACCAGATTGGCTCAGGCTGGAGACCCCTTGTGGGTTATCTCTAATGACCACTCTTCTGGTACCCACCAAGTCCTGAATGAAGAGGAATACTTGAGGACTTTTCCCAGGGGCCTAGGTCCTAAACCCTTGGGATTAAGATCTGAAGCTTCAAGGGAGTCCGCTGTCGTTATCATGAACCATATTAACCTTGTTGAGATTCTCATGGACGTGAATCAATGGTCAAGAGTGTTTTGCGGCATTGTTTCAAGAGCAATGACACTTGAAGTCCTGTCAACTGGAGTGGCAGGAAACTATAATGGAGCCTTACAAGTGATGTCTGCCGAGTTCCAAGTCCCTTCACCTCTTGTTCCCACAAGAGAGAACTACTTCGTTCGCTACTGTAAGCAGCATGCAGATGGGACATGGGCAGTGGTCGATGTTTCCTTGGACAACATACGACCAACTGCTTTATCTAAAAGCCGAAGAAGGCCTTCTGGCTGTCTGATCCAAGAATTGCCAAATGGATACTCTAAGGTTACTTGGATTGAACATGTTGAAGTGGATGACAGAAATACGCACAATATATACAGACCCCTTGTCAATTCTGGCCTTGCCTTTGGAGCTAAACGTTGGGTGGCCACACTAGATAGACAATGTGAACGTATTGCTAGTTCTATGGCCTGCAACATACCTGCAGGGGACCTTTGTGTGATAACAAGTTCTGAGGGAAGGAAGAGTATGATGAAGCTAGCAGAGAGAATGGTGATGAGCTTCTGTGCCGGAGTTGGGGCTTCAACAGCACATGCATGGACAACACTATCAGCAACAGGGAATGATGATGTGAGGGTAATGACCAGAAAGAGTATGGATGATCCAGGAAGGCCTCCTGGTATAGTTCTCAGTGCTGCGACTTCTTTCTGGCTTCCAGTTCCTCCAAACAGGGTCTTCAATTTCCTTCGAGATGAAAACTCCAGAAGTGAGTGGGATATTTTATCCAATGGAGGTATGGTCCAAGAAATGGCTCACATAGCAAATGGTCGTGATCCAGGCAATTTTGTCTCTCTACTCCGTGTCAATAGTGCAAATTCAAGCCAAAGCAACATGGTGATACTTCAGGAGAGCTGCACAGACGCAACGGGGTCGTATGTGATATATGCTCCTGTTGATATTGTGGCCATGAACACAGTGCTTGGAGGAGGAGACCCTGACTATGTTGCCCTCTTGCCCTCTGGTTTTGCCATTCTTCCTGCTGGCTCCTCACTGAACAATAATGGAGGAGGAGGAGGAGGGCCTATTCTTGATGTTGGATCAGGAGGTTCTCTTCTCACTGTTGCGTTTCAGATCTTAGTTGACTCAGTGCCAACAGCTAAACTCTCTCTGGGCTCAGTCGCCACTGTTAACAGTTTGATTAAGTGCACCGTTGAAAGGATCAAAGCTGCTCTCATCTAA 2220 0.4707 MFQQPNMFDSNVLDVSHKMSSDSDLVGRKTNDDDYETKSVTETTMEAPSGDDQDPDQRPKRKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENSILKAENEKLRAENSRYKDALSNASCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSFSHFSSHHLPSRSLEDLGVGSNFVSQSGTIGEMYSVSNSDLIRSLPMPSEADKPMIVELAVAAMEELTRLAQAGDPLWVISNDHSSGTHQVLNEEEYLRTFPRGLGPKPLGLRSEASRESAVVIMNHINLVEILMDVNQWSRVFCGIVSRAMTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKQHADGTWAVVDVSLDNIRPTALSKSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRNTHNIYRPLVNSGLAFGAKRWVATLDRQCERIASSMACNIPAGDLCVITSSEGRKSMMKLAERMVMSFCAGVGASTAHAWTTLSATGNDDVRVMTRKSMDDPGRPPGIVLSAATSFWLPVPPNRVFNFLRDENSRSEWDILSNGGMVQEMAHIANGRDPGNFVSLLRVNSANSSQSNMVILQESCTDATGSYVIYAPVDIVAMNTVLGGGDPDYVALLPSGFAILPAGSSLNNNGGGGGGPILDVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAALI 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4886g00043 739 MobiDBLite consensus disorder prediction 1 69 - -
Pral4886g00043 739 SMART HOX_1 59 122 IPR001356 GO:0003677
Pral4886g00043 739 FunFam Homeobox-leucine zipper protein GLABRA 2 255 477 - -
Pral4886g00043 739 MobiDBLite consensus disorder prediction 21 40 - -
Pral4886g00043 739 SUPERFAMILY Bet v1-like 248 480 - -
Pral4886g00043 739 Pfam START domain 256 478 IPR002913 GO:0008289
Pral4886g00043 739 ProSiteProfiles START domain profile. 246 481 IPR002913 GO:0008289
Pral4886g00043 739 CDD homeodomain 60 119 IPR001356 GO:0003677
Pral4886g00043 739 Gene3D - 324 483 IPR023393 -
Pral4886g00043 739 SUPERFAMILY Homeodomain-like 45 118 IPR009057 -
Pral4886g00043 739 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Pral4886g00043 739 Coils Coil 112 147 - -
Pral4886g00043 739 FunFam Homeobox-leucine zipper protein HDG1 49 134 - -
Pral4886g00043 739 Pfam Homeodomain 61 116 IPR001356 GO:0003677
Pral4886g00043 739 SUPERFAMILY Bet v1-like 499 735 - -
Pral4886g00043 739 MobiDBLite consensus disorder prediction 1 18 - -
Pral4886g00043 739 CDD START_ArGLABRA2_like 250 477 - -
Pral4886g00043 739 SMART START_1 255 478 IPR002913 GO:0008289
Pral4886g00043 739 Gene3D - 48 134 - -
Pral4886g00043 739 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 57 738 IPR042160 -
Pral4886g00043 739 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4886g00043 Pral-Chr4886 267059 272435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4886g00043 4 738 Homeobox Transcription Factor Family AT4G04890 79.357 0.0 1187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral4886g00043 START 4.1e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4886g00043 K09338 - qsu:112016283 1216.45