Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4886g00042 ATGTGTGCCACCCCCAATTATTCAAACATGGCTGCCTCCCACCAATCTCTCCTTCACAAACCCAACAAATCCATTTCCAGGACCATGTGGCTTCTTCTCTCTCTAGCTGCTCTCGTCAGTTCTGCTCTTTTTGCTTCTTATCTCTTCACACCCTCCTCCTCCTTCTTCAACCTTTCTCTTCCCCCTTATCATCATCTATGTGATCATGCCCTTCACAGATCTTCATGCCTTGCCCACGTCTCTGAATTAACTAAAGCTTCGACCTTTAACCACCAAAACTCCAAATTGCTTCAATCTTTCCTGATCAGATCCACCTCACAAATCCAGAAAACTGTGGACTCAACCAAAGCCATCAAATACAGAATCAACGATCCAAAACAGCAGCAAGCTCTGCTTGTCTGTGAACAACTTCTGGACTCGTCCCTTGACAGGGTTTGGGACTCTGTGGTGGCTCTCACAGAGAACACCACCAAATCCTACCAGGATGCTCACACATGGCTCAGCACTGTCCTCACTAACCACGTCACTTGCTTGGATGAGTTAGAAGGAGCGGGCTCCGCTCGAGCCCTTATCGAGTCTGAGCTCAATGACTTGGTCTCCAGAGCCAGAACCTCCCTAGCCATGCTTGTTCATGTCATGCCCTCTAACACTGAAACTATTGAGGAGCCACTGAATGGAGAATTTCCCTCATGGGTGACCAGTAAGGACAGGAAGCTTCTGGAGGCTTCTGCGAATGATATAAAGGCTAACGTTGTGGTGGCCAAGGACGGAAGTGGCAGGTTTAAAACGGTGAAGGAGGCCGTGGATGCGGCACCTGATAACAGTAAGACGAGGTATGTAATATATGTCAAGAAGGGAGTTTATAAAGAGAATGTTGAGATTGGATCCAAGAAGAAGAATGTGATGCTAGTGGGTGATGGTAAAGATGAGACGATCATAACTGGAAGTTTGAATTTTGTCGATGGAACTTCCACCTTCAGGACAGCCACCGTCGCTGCGGTTGGGGATGGATTCATAGGCCAGGACATATGGTTCCAGAACACGGCAGGCCCTCAGAAGCACCAAGCGGTGGCTCTCCGCGTCGGCGCTGATCTCTCCGTCATCAACCGCTGCCGTGTGGACGCCTTCCAAGACACCCTATATGCCCACTCCAACAGGCAATTCTACCGTGACTCCATCATCACAGGCACCGTCGACTTCGTCTTCGGCAACGCGGCCGTGGTGTTCCAGAAATGCTTCCTAGCGGCTCGAAGGCCAATGGATAAACAGAACAACATGGTCACCGCACAAGGACGCGTAGACCCAAACCAGAACACAGGGACTTCAATCCAGCAATGCAACCTTACACCAAGCTCTGATCTCAAGCCAGTGATCGGTTCGGTGAAAACCTTTCTGGGTCGTCCATGGAAGGAGTTCTCTCGAACTGTGGTGATGCAATCGTTCCTGAGCACCCACATTGATCCAGCAGGATGGGCTCCATGGGACGACAAGCAATCCACACTGAAGAATCTGTATTATGGAGAGTACAAGAACAGAGGACCTGGTGCTGGGACAGCCAAGAGAGTGAAGTGGCCTGGGTTCCATGTGATTACAAGTGCTTCTGAGGCAAGCAAATTCACAGTGGCTCAGCTCATTCAAGGCGGGACTTGGCTCAAGGACACTGGGGTCGCCTTCACTGAAGGGCTCTAA 1689 0.5021 MCATPNYSNMAASHQSLLHKPNKSISRTMWLLLSLAALVSSALFASYLFTPSSSFFNLSLPPYHHLCDHALHRSSCLAHVSELTKASTFNHQNSKLLQSFLIRSTSQIQKTVDSTKAIKYRINDPKQQQALLVCEQLLDSSLDRVWDSVVALTENTTKSYQDAHTWLSTVLTNHVTCLDELEGAGSARALIESELNDLVSRARTSLAMLVHVMPSNTETIEEPLNGEFPSWVTSKDRKLLEASANDIKANVVVAKDGSGRFKTVKEAVDAAPDNSKTRYVIYVKKGVYKENVEIGSKKKNVMLVGDGKDETIITGSLNFVDGTSTFRTATVAAVGDGFIGQDIWFQNTAGPQKHQAVALRVGADLSVINRCRVDAFQDTLYAHSNRQFYRDSIITGTVDFVFGNAAVVFQKCFLAARRPMDKQNNMVTAQGRVDPNQNTGTSIQQCNLTPSSDLKPVIGSVKTFLGRPWKEFSRTVVMQSFLSTHIDPAGWAPWDDKQSTLKNLYYGEYKNRGPGAGTAKRVKWPGFHVITSASEASKFTVAQLIQGGTWLKDTGVAFTEGL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4886g00042 562 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Pral4886g00042 562 SUPERFAMILY Pectin lyase-like 248 561 IPR011050 -
Pral4886g00042 562 ProSitePatterns Pectinesterase signature 1. 275 294 IPR018040 -
Pral4886g00042 562 FunFam Pectinesterase 244 562 - -
Pral4886g00042 562 Gene3D - 244 562 IPR012334 -
Pral4886g00042 562 CDD PMEI-like_4 74 210 - -
Pral4886g00042 562 SMART PMEI_2 51 208 IPR006501 GO:0004857
Pral4886g00042 562 Pfam Plant invertase/pectin methylesterase inhibitor 65 198 IPR006501 GO:0004857
Pral4886g00042 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 212 IPR035513 -
Pral4886g00042 562 Pfam Pectinesterase 250 547 IPR000070 GO:0030599|GO:0042545
Pral4886g00042 562 NCBIfam pectinesterase inhibitor domain 63 186 IPR006501 GO:0004857
Pral4886g00042 562 PANTHER PECTINESTERASE 44 552 - -
Pral4886g00042 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 209 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4886g00042 Pral-Chr4886 251744 254633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4886g00042 8 562 Carbohydrate Esterase AT1G11580 55.615 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4886g00042 K01051 - gmx:100815836 770.385