LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4886g00009	ATGTGGATTGAAATTGATCATCACAAAATAATTCGTCTCATGAATTCTCTTCAGCTCTGTCTTCTTCCTTGCCTTGTAATCCTTTCGATTGCCAGAATCAAAGGACAGACTTACTTCTGTTCCCCTACAACTTATGCCCAGAAAAGCACGTTTCAGACAAACGTGAATCACTTACTCCCTTCCCTTTCCTCCAACACCAATCAAAGTGATGGATTTTACAACACCACCGTCTCCGGGCAAGGAAACAACTCCAACGACACCGTCTACGGCATGTTCCAGTGCCTCGGCGATGCCACCGTCCAGACCTGTCAAAAATGTGTTTCCGACGGGATCAAAGACATCCTTCAGAGATGCCCCAATAATACAGGAGCCGTCGGGTGGTACGACAAGTGCTGGTTACATTACTCCGACCAGTATTTCTTCTCCAAAATGGAAGAAGAACCCCAGAGGATTGTTGTTAACACCCGCAATGCAACGGACACGAATAGCTTTATGAATCGTTTGGGAGAAACCTTGAGAGTGGTTGCCAAAAAAGCGTCGGAAGGCGGAAGCAAAAAATTTGCGACAAAAGAAGCAAACTATACTTCTTTTGAAACTCTGCACACTATGGCGCAGTGCACGCCGGATATATCTGAGATTGATTGTCTCAACTGTCTCGGTAACAGTATTAGCAATTTGCCTTATTGCTGTAATGGAAATGTCGGCGGAGTAACCCTCAAGCCCAGTTGCTATTTAAGGTATGAAATGTACGCCTTTTACCAGGAAGCGCCTCCGCCGCCTGCTCCTTCGCCGGAATCCACTTCTAAAGGCAGGATTTCAGCTGGGATAATTATTGCCATAGCTGTTCCAACAGTGACATTCATATTGCTCTGCTTCTGGTGCTTAAAAAGGAGAGCAAGGAAATATGCTTCAGTTCCTAAACAAAGTGTTGACATTTCAAGCGTAGAATCCCTACAATTTGATTTGGATACCATCAAAACAGCCACAAATGACTTCTCTCCTGACAATAGACTTGGTCAAGGAGGATTTGGTGAGGTTTACAAGGGTGTTCTACCTGGTGGACAAGAGTTAGCCGTAAAAAGACTATCAAGCGGATCAAAACAAGGTATGGGAGAATTTAAGAACGAAGTTATTACAATGGCAAAGCTTCAACATAGAAATCTCGTAAGGTTACTTGGATTTTGTTTGGACGAAGAAGAAAAGATACTCGTATATGAATTTTTGCCCAACAGAAGCTTGGATAATTTTTTGTTTGGACTTGAAAACCAGGGTAAATTGAATTGGTCAAGGCGTTACAAGATTATCGTAGGCATTACAAGAGGGATGCTTTATCTTCATGAAGATTCTCGACTAAAAATCATACATCGTGATCTCAAAGCTAGTAATGTATTGTTGGATGAAGATTTGAATCCAAAAATCTCTGACTTTGGTATGGCTAGAATTTTTGGAGTCGATCAAACGCAAGCAAGCACAAGCAGAGTTGTCGGCACCTTTGGATATATGGCTCCAGAATATGCAATGCATGGTCATATTTCAATCAAATCTGATATATATAGTTTTGGTGTCCTGATTTTGGAGATTATTAGCGGCAAGAAGAATACATCTTTCTATATTTCAAGCTATGCTGAAGACCTACTAAGCTATGCCTGGAGGCTGTGGAGGGAAGGGAGGCCATTGGAATTGCTGGATCCTAGTTTAAGAGATTCTTGTTCGAGAAATGAAGTTATTAAATGCATCCATATGAGCTTGTTATGTATTCAGGAAAACCCAGCTCTGAGACCTACAATACAGTCTATTATGGTGATGCTAAGCAGTCACTCCGTCACATTGTCGGATCCTCAGGAGCCAGCATTTTTTGTTGGTCGCCATAGAACAGATGCAAACAATCCAGCCATTTATGAAAATATTTCAGATCAATCTACCAGCAAGTCTGCGCAGTGGTCTGTAGATAAAGATCCGATTACTGATTTCTACCCTCGCTAG	1983	0.4206	MWIEIDHHKIIRLMNSLQLCLLPCLVILSIARIKGQTYFCSPTTYAQKSTFQTNVNHLLPSLSSNTNQSDGFYNTTVSGQGNNSNDTVYGMFQCLGDATVQTCQKCVSDGIKDILQRCPNNTGAVGWYDKCWLHYSDQYFFSKMEEEPQRIVVNTRNATDTNSFMNRLGETLRVVAKKASEGGSKKFATKEANYTSFETLHTMAQCTPDISEIDCLNCLGNSISNLPYCCNGNVGGVTLKPSCYLRYEMYAFYQEAPPPPAPSPESTSKGRISAGIIIAIAVPTVTFILLCFWCLKRRARKYASVPKQSVDISSVESLQFDLDTIKTATNDFSPDNRLGQGGFGEVYKGVLPGGQELAVKRLSSGSKQGMGEFKNEVITMAKLQHRNLVRLLGFCLDEEEKILVYEFLPNRSLDNFLFGLENQGKLNWSRRYKIIVGITRGMLYLHEDSRLKIIHRDLKASNVLLDEDLNPKISDFGMARIFGVDQTQASTSRVVGTFGYMAPEYAMHGHISIKSDIYSFGVLILEIISGKKNTSFYISSYAEDLLSYAWRLWREGRPLELLDPSLRDSCSRNEVIKCIHMSLLCIQENPALRPTIQSIMVMLSSHSVTLSDPQEPAFFVGRHRTDANNPAIYENISDQSTSKSAQWSVDKDPITDFYPR	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4886g00009	660	SMART	serkin_6	332	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral4886g00009	660	Gene3D	Phosphorylase Kinase; domain 1	295	407	-	-
	Pral4886g00009	660	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	43	648	-	-
	Pral4886g00009	660	FunFam	Cysteine-rich receptor-like protein kinase 10	296	407	-	-
	Pral4886g00009	660	ProSiteProfiles	Gnk2-homologous domain profile.	33	140	IPR002902	-
	Pral4886g00009	660	FunFam	Cysteine-rich receptor-like protein kinase 25	148	252	-	-
	Pral4886g00009	660	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	453	465	IPR008271	GO:0004672\|GO:0006468
	Pral4886g00009	660	ProSitePatterns	Protein kinases ATP-binding region signature.	338	360	IPR017441	GO:0005524
	Pral4886g00009	660	SUPERFAMILY	Protein kinase-like (PK-like)	317	625	IPR011009	-
	Pral4886g00009	660	FunFam	cysteine-rich receptor-like protein kinase 10	408	610	-	-
	Pral4886g00009	660	Gene3D	-	149	252	IPR038408	-
	Pral4886g00009	660	Gene3D	-	34	140	IPR038408	-
	Pral4886g00009	660	Pfam	Protein tyrosine and serine/threonine kinase	336	601	IPR001245	GO:0004672\|GO:0006468
	Pral4886g00009	660	ProSiteProfiles	Gnk2-homologous domain profile.	146	252	IPR002902	-
	Pral4886g00009	660	Gene3D	Transferase(Phosphotransferase) domain 1	408	615	-	-
	Pral4886g00009	660	Pfam	Salt stress response/antifungal	156	249	IPR002902	-
	Pral4886g00009	660	Pfam	Salt stress response/antifungal	40	137	IPR002902	-
	Pral4886g00009	660	CDD	STKc_IRAK	338	603	-	-
	Pral4886g00009	660	ProSiteProfiles	Protein kinase domain profile.	332	609	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4886g00009	Pral-Chr4886	86432	89685	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4886g00009	43	660	Receptor kinase-like Gene Family	AT4G05200	50.078	0.0	626

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral4886g00009		PK_Tyr_Ser-Thr	2.5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4886g00009	-		-	csin:114306417	707.983