Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4886g00004 ATGATTCGTTTCATGAATTCTGCTCAACTCTTTCTTCTTCTCTGCCTTGTGATCCTTTCGATTGCCAGAATCAAAGGACAAACTTACTCCTGTTCCCCTACAACTTATGCCCAGAAAAGCATGTTTCAGACAAATGTGAATCACTTACTTTCTTCCCTTTCCTCCAACACCAATCAAAGTGATGGATTTTACAACACCACCGTCTCCGGGCAAGAAAACAACTCCAACGCCACCGTCTACGGCATGTTCCAGTGCCTCGGCGATGCCACCGTCCAGACCTGTCAAAAATGTGTTTCCGACGGAATCAAAGATATCCTTCAAAGATGCCCCAACAATACCGGAGCCATCGGTTGGTACGACAAGTGCTGGTTACGTTACTCCGACCAGTATTTCTTCTCCAAAACGGAAGAAAACCCGATGTTAATTCTTTATAACACCGGCAATGCAACAGACACGATCAGCTTTATGAAGCAGGTGGGTGAAACCTTGAGAGGGATTGCAAAAGAGGCATCGGAAGGCGGAAGCAAGAAATTTGCGACAAAAACAGTAGACTATGATGTTTTTCAAACTCTGTATACTATGGCGCAGTGCACGCCGGATATATCTGAGATTGATTGTCTCAACTGTCTCCGTAACAGTATTAGCAATTTGCCTATTTGCTGTAATGGAAAAGTAGGCGGAGTAACCCTCAAGCCCAGTTGCTATTTAAGGTATGAAACGTACGCCTTTTACCAGGAACCACCTCCCCCACCTGCGCGCCCGCCACCAGCTCCTTCGCCGGAATCCACTTCCAAAGATAAAAGCAGGATTTCAGCTGGGATAATTATTGCCATAGCTGTTCCAACGGTGACATTCATATTGCTCTGCTTCTTGTGCTTAAAAAGGAGGGCAAGGAAAGATGCTTCAGTTCCTAAACAAAGTGTTGATATTTCAAGCGTAGAATCCCTGCAATTTGATTTGGATACCATCAGAACAGCCACAAATGACTTCTCTCCTGACAATAAACTTGGTCAAGGAGGATTTGGTGAGGTTTACAAGGGTGTCCTGCCTGGTGGACAAGAGTTAGCCGTAAAAAGACTATCAAGCGGTTCAAAACAAGGTGTGGGAGAATTTAAGAATGAAGTTGCCACGATGGCAAAACTTCAACATAGGAATCTTGTAAGGTTACTTGGATTTTGTTTGGATGAAGAAGAAAAGATACTCGTATACGAATTTTTGCCCAACAGAAGCTTGGATAATTTTTTGTTCGACCCACTTTGTAGTGGTAAATTGAATTGGTCTATGCGTTACAAGATTATTGAAGGCATTACAAGAGGAATGCTTTATCTTCATGAAGATTCTCGACTAAAAATCATACATCGTGATCTCAAAGCCAGTAATATATTGTTGGATGAAGATTTGAATCCAAAAATCTCTGATTTTGGTATGGCTAAAATTTTTGGAGTTGATCAAACACAAGCAAGCACAAGCAGAGTTGTCGGCACCTTTGGATACATGGCTCCAGAATATGTAACGCATGGTCATATTTCAATCAAATCTGATATATATAGTTTTGGTGTCCTCATTTTGGAGATTATTAGCGGCGAGAAGAATACATCTTTCTATATTTCAAGTTATGCCGAAGACCTACTAAGCTTTGCCTGGAGGCTGTGGAGGGAAGGGAGGCCATTGGAATTGCTGGATCCTAGTTTAAGAGACTCTTGTTCGAGAAACGAAGTTATTAAATGCATCCATATGAGCTTGTTGTGTGTTCAGGAAAACCCGGCTCTCAGACCCACAATGCAGTCTATTATGGTGATGCTAAGCAGTCACTCCTTCACATTGCCGGATCCTCGGGAGCCTGCCCTTTTTGTTGGTCGCGATCGAACAGATTCAAACAATCCAGCCATTTATGAAAATAGTTTGGATCAATCTACAAGCAAGCATGGTATTTTACCAGGTGGACAAGAGTTAGCTGTGAAGAGATTATCAAGTAGTTCCAAACAAGGTGTACTAGAATTTAAGAATGAAGTAGTTACCATGGCAAAGCTTCAACATAGAAATATCGTCAGGAAGAATACTTCTTTCTATGCATCAAATTATGCCGAAAACCTTCTAACCTATGAAAATCCAGCTCCAAGACCAGCGATACAATTTATTATGGTGAATCAAGCAGGTTTTGAGAATAGCTCGGATCAATCTACTGGCAAGTCTATGCAACGATCTGTGGATGAAGATCCAATTTCTGACATAATCAAAGGACAACACGACTGTTCCCCTACAACTTATGCCCAGAAAAGCACGTTTCAGACAAATGTGAATCACTTACTTTCTTCCCTTTCCTCCAACACCAATCAAAGTGATGGATTTTACAACACCACCGTCGCCGGGCAAGAAAACAACCCCAACGCCACCGTTTACGGCATGTTCCAGTGCCTCGGCGATGTCACCGTCCAGACCTGTCAAAAATGTGTTTCCGACGAAATCAAAGATATCCTTCAGAAATGCCCCAACAATACTGGAGCCACCGGTTGGAACGACAAGTGCTGGTTACGTTACTCCGACCAGTATTTCTTCTCCAAAACGGAAGAAAAGCCCATGTTAGTTTATTATAACACCGGCAATGCAACAGACACGACCAGCTTTATGAAGCTGGTGGGTGAAACCTTGAGGGGGATTGCGAAAGAGGCATCGGAAGGCGGAAGCAAGAAATTTGCGACAAAAACAGTAGACTATGATGTTTTTCAAACCCTGTATACTATGGCGCAGTGCACGCCGGATATATCTGAGATTGATTGTCTCAACTGTCTCCGCAACAGTATTAGCAATTTGCCTATTTGCTGTAATGGAAAAGTAGGCGGAGTAACCCTCAAGCCCAGTTGCTATTTAAGGTATGAAACGTACGCCTTTTACCAGGAACCGCCCCCCCCACCTGCGCTTCCGCCACCAGCTCCTTCGCCGGAATCCACTTCCAAAGCTGGGATAATTATTGCCATAGCCGTTTCAACGGTGACATTCATATTGCTCTGCTTCTTGTGCTTAAAAAGGAGGGCAAGGAAATATGCTTCAGTTCCTAAACAAAGTGTTGATATTTCAAGCGTAGAATCCCTGCAATTTGATTTGGATACCATCAGAACAGCCACAAATGACTTCTCTCCTGACAATAAACTTGGTCAAGGAGGATTTGGTGAGGTTTACAAGGGTGTTCTACCTGGTGGACAAGAGTTAGCCGTAAAAAGACTATCAAGCGGTTCAAAACAAGGTCTGGGAGAATTTAAGAATGAAGTTGTTATGATGGCAAAACTTCAACATAGAAATCTCGTAAGGTTACTTGGATTTTGTTTGGATGAAGAAGAAAAGATACTCATATACGAGTTTTTGCCCAACAGAAGCTTGGATAATTTTTTGTTTGGACTTGAAGACCAGGATAAATTGAATTGGTCAAGGCGTTACAAGATTATCGAAGGCATTACAAGAGGGATGCTTTATCTTCATGAAGATTCTCGACTAAAAATCATACATCGTGATCTCAAAGCTAGTAATGTATTGTTGGATGAAGATTTGAATCCAAAAATCTCTGATTTTGGTATAGCTAAAATTTTTGGAGTTGATCAAACACAAGCAAGCACAAGCAGAGTTGTCGGCACCTTTGGATACATGGCTCCAGAATATGCAATGCATGGTCATATTTCAATCAAATCTGATATATATAGTTTTGGTGTCCTGATTTTGGAAATTATTAGCGGCAAGAAGAATACATCTTTCTATATTTCAAGCTATGCTGAAGACCTACTAAGCTATGCCTGGAGGCTGTGGAGGGAAGGGAGGCCATTGGAATTGCTGGATCCTAGTTTAAGAGACTCTTGTTCGAGAAATGAAGTTATTAAATGCATCCATATGAGCTTGTTATGTATTCAGGAAAACCCAGCTCTGAGACCTACAATACAGTCTATTATGGTGATGCTAAGCAGTCACTCCGTCACATTGTCGGATCCTCGGGAGCCAGCCTTTTTTGTTGGCCGCCATAGAACAGATTCAAACAATCCAGCCATTTATGAAAATAGTTCAGATCAATCTACCAGCAAGTCTGCGCAGCTGTCCGTGGATAAAGATCCGGTTACTGATTTGTACCCTCGCTAG 4119 0.4219 MIRFMNSAQLFLLLCLVILSIARIKGQTYSCSPTTYAQKSMFQTNVNHLLSSLSSNTNQSDGFYNTTVSGQENNSNATVYGMFQCLGDATVQTCQKCVSDGIKDILQRCPNNTGAIGWYDKCWLRYSDQYFFSKTEENPMLILYNTGNATDTISFMKQVGETLRGIAKEASEGGSKKFATKTVDYDVFQTLYTMAQCTPDISEIDCLNCLRNSISNLPICCNGKVGGVTLKPSCYLRYETYAFYQEPPPPPARPPPAPSPESTSKDKSRISAGIIIAIAVPTVTFILLCFLCLKRRARKDASVPKQSVDISSVESLQFDLDTIRTATNDFSPDNKLGQGGFGEVYKGVLPGGQELAVKRLSSGSKQGVGEFKNEVATMAKLQHRNLVRLLGFCLDEEEKILVYEFLPNRSLDNFLFDPLCSGKLNWSMRYKIIEGITRGMLYLHEDSRLKIIHRDLKASNILLDEDLNPKISDFGMAKIFGVDQTQASTSRVVGTFGYMAPEYVTHGHISIKSDIYSFGVLILEIISGEKNTSFYISSYAEDLLSFAWRLWREGRPLELLDPSLRDSCSRNEVIKCIHMSLLCVQENPALRPTMQSIMVMLSSHSFTLPDPREPALFVGRDRTDSNNPAIYENSLDQSTSKHGILPGGQELAVKRLSSSSKQGVLEFKNEVVTMAKLQHRNIVRKNTSFYASNYAENLLTYENPAPRPAIQFIMVNQAGFENSSDQSTGKSMQRSVDEDPISDIIKGQHDCSPTTYAQKSTFQTNVNHLLSSLSSNTNQSDGFYNTTVAGQENNPNATVYGMFQCLGDVTVQTCQKCVSDEIKDILQKCPNNTGATGWNDKCWLRYSDQYFFSKTEEKPMLVYYNTGNATDTTSFMKLVGETLRGIAKEASEGGSKKFATKTVDYDVFQTLYTMAQCTPDISEIDCLNCLRNSISNLPICCNGKVGGVTLKPSCYLRYETYAFYQEPPPPPALPPPAPSPESTSKAGIIIAIAVSTVTFILLCFLCLKRRARKYASVPKQSVDISSVESLQFDLDTIRTATNDFSPDNKLGQGGFGEVYKGVLPGGQELAVKRLSSGSKQGLGEFKNEVVMMAKLQHRNLVRLLGFCLDEEEKILIYEFLPNRSLDNFLFGLEDQDKLNWSRRYKIIEGITRGMLYLHEDSRLKIIHRDLKASNVLLDEDLNPKISDFGIAKIFGVDQTQASTSRVVGTFGYMAPEYAMHGHISIKSDIYSFGVLILEIISGKKNTSFYISSYAEDLLSYAWRLWREGRPLELLDPSLRDSCSRNEVIKCIHMSLLCIQENPALRPTIQSIMVMLSSHSVTLSDPREPAFFVGRHRTDSNNPAIYENSSDQSTSKSAQLSVDKDPVTDLYPR 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4886g00004 1372 Pfam Protein tyrosine and serine/threonine kinase 1047 1313 IPR001245 GO:0004672|GO:0006468
Pral4886g00004 1372 Pfam Protein tyrosine and serine/threonine kinase 333 599 IPR001245 GO:0004672|GO:0006468
Pral4886g00004 1372 MobiDBLite consensus disorder prediction 1334 1372 - -
Pral4886g00004 1372 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 751 1358 - -
Pral4886g00004 1372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1165 1177 IPR008271 GO:0004672|GO:0006468
Pral4886g00004 1372 SUPERFAMILY Protein kinase-like (PK-like) 646 694 IPR011009 -
Pral4886g00004 1372 ProSiteProfiles Gnk2-homologous domain profile. 857 963 IPR002902 -
Pral4886g00004 1372 ProSiteProfiles Protein kinase domain profile. 1044 1321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4886g00004 1372 FunFam cysteine-rich receptor-like protein kinase 10 406 608 - -
Pral4886g00004 1372 Gene3D Transferase(Phosphotransferase) domain 1 1120 1326 - -
Pral4886g00004 1372 Gene3D Transferase(Phosphotransferase) domain 1 406 608 - -
Pral4886g00004 1372 ProSiteProfiles Protein kinase domain profile. 330 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4886g00004 1372 FunFam Cysteine-rich receptor-like protein kinase 10 1008 1119 - -
Pral4886g00004 1372 FunFam Cysteine-rich receptor-like protein kinase 25 139 243 - -
Pral4886g00004 1372 ProSiteProfiles Gnk2-homologous domain profile. 24 131 IPR002902 -
Pral4886g00004 1372 MobiDBLite consensus disorder prediction 246 261 - -
Pral4886g00004 1372 MobiDBLite consensus disorder prediction 246 266 - -
Pral4886g00004 1372 FunFam Cysteine-rich receptor-like protein kinase 25 859 963 - -
Pral4886g00004 1372 CDD STKc_IRAK 1050 1315 - -
Pral4886g00004 1372 CDD STKc_IRAK 336 601 - -
Pral4886g00004 1372 Gene3D Phosphorylase Kinase; domain 1 1007 1119 - -
Pral4886g00004 1372 Gene3D Phosphorylase Kinase; domain 1 292 405 - -
Pral4886g00004 1372 Gene3D - 858 963 IPR038408 -
Pral4886g00004 1372 Gene3D - 745 851 IPR038408 -
Pral4886g00004 1372 Gene3D - 25 131 IPR038408 -
Pral4886g00004 1372 Gene3D - 138 243 IPR038408 -
Pral4886g00004 1372 MobiDBLite consensus disorder prediction 1340 1361 - -
Pral4886g00004 1372 ProSitePatterns Protein kinases ATP-binding region signature. 1050 1072 IPR017441 GO:0005524
Pral4886g00004 1372 SUPERFAMILY Protein kinase-like (PK-like) 308 601 IPR011009 -
Pral4886g00004 1372 ProSiteProfiles Gnk2-homologous domain profile. 137 243 IPR002902 -
Pral4886g00004 1372 Pfam Salt stress response/antifungal 147 241 IPR002902 -
Pral4886g00004 1372 Pfam Salt stress response/antifungal 751 848 IPR002902 -
Pral4886g00004 1372 Pfam Salt stress response/antifungal 31 128 IPR002902 -
Pral4886g00004 1372 Pfam Salt stress response/antifungal 867 961 IPR002902 -
Pral4886g00004 1372 Gene3D Phosphorylase Kinase; domain 1 625 702 - -
Pral4886g00004 1372 FunFam cysteine-rich receptor-like protein kinase 10 1120 1322 - -
Pral4886g00004 1372 FunFam Cysteine-rich receptor-like protein kinase 10 294 405 - -
Pral4886g00004 1372 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Pral4886g00004 1372 ProSiteProfiles Gnk2-homologous domain profile. 744 851 IPR002902 -
Pral4886g00004 1372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Pral4886g00004 1372 SUPERFAMILY Protein kinase-like (PK-like) 1023 1315 IPR011009 -
Pral4886g00004 1372 SMART serkin_6 330 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4886g00004 1372 SMART serkin_6 1044 1321 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4886g00004 Pral-Chr4886 15268 29902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4886g00004 643 702 Receptor kinase-like Gene Family AT4G05200 48.333 4.44e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral4886g00004 PK_Tyr_Ser-Thr 3.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4886g00004 - - pop:18097422 1218.76