Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4884g00028 ATGGATTCTATTAAGGCGTTCCTGCTCCTTGCTCTTCTAATCTTTTTCATTGCTAGAATCAAAGCACAGGAACCAGAGGTGGATTGTTCAGGCCCTACTTATGCCCCAAACAGCACATATCACTCAAATCTCAATCGCCTGCTTTCAACTCTTTCCTTAAACGCCAATAGCATTGGTGGCTTTTACAACACCACCGTCGGACAAAACGACGACGCCGTCTACGGTCTCTACCTCTGCCGCGGAGACACCACCGTCTCCGCCTGTCAAGCATGTGTTTCCCGGGCAACCAAAGATATCAGGCAATGCCTCAATTATACCGAAGCCGCGGGTTGGTACGACAAGTGCATGTTACGATACTCGGACGCCGATTTCTTCTCCATAGAGCAAGATGATCCCACTCGCGTCCTTTACAACAACGGCAACGCAACAGATCCCAAAAGCTTTATGCAACTGGTGATCGATACCATGAATGCGGTGGCCAGAGAAGCGGCGTACCGCGGCGGCGGGGGTAGCAAGAAATTTGCGACGAAAGAAAAAAATTACAGTTCTTTTCAAACTCTGTACACTATGGCGCAGTGCACACCGGATATATCTAGAGATGACTGTTATAACTGTCTGAGAAGAACAATCGGAGAGTATCCGAATTGCTGTTTTGGGAGGTTAGGGGCAATCGCACGCGCCTTCAGTTGCAACGTAAGGTATGAATTGTACCCCTTTTATGGAGTGATTTCGTCGCTTCCTTCCCCTCGTGTGCCAGAGTCAGCCTTCACTTCCAATGATAAGGGCAAGATTTCGGGTAGGACAGTTATCGCCATAGTGGTTCAAACCGCGATAGCCGTATTGCAAGCCTCGTTCTGCTTCTTGTGCCTTAGGTGGTGGAGAGCAAGGAAGAATGCTTCAGTTCCTAAAACTGGTGAGACTTCAAGTGTAGAGTCTCTACATTTTGATTTGGATACCATCAAATCGGCCACAAACGACTTCTCCCCCGACAATAAACTAGGCCAAGGTGGGTATGGCGAGGTGTACAAGGGCATTTTACCTGGTGGACAAGAGTTAGCTGTGAAGAGATTATCAAGTAGTTCCAAACAAGGTGTCCTAGAATTTAAGAATGAAGTAGTTACAATGGCAAAACTACACCATAGAAATCTTGTAACGTTTCTTGGATTTTGTTTGGATGAAGAAGAAAAGATACTCATATATGAATTTTTGCCCAACAAAAGCTTGGATAATTTTTTGTTTGGATTGGAAAACACAACTAAATTGAATTGGTCAAATCGATACAAGATTATTGAAGGCATTGCAAGGGGAATACTTTATCTTCATGAAGATTCTCAATTGAAAATTATACATCGTGATCTCAAATCTAGCAATATATTGTTGGATGAGGATTTGAATCCAAAAATATCTGATTTCGGTATGGCTCGAATTTTTGGAACCGATCAAACTCAGGCCAGCACAAGTAAAGTTGTCGGCACATTTGGCTACATCGCTCCTGAGTATGCAGTGCATGGTCATATTTCATTCAAATGTGATATATATAGTTTTGGCATCCTAATTCTGGAGATCATTAGTGGCAAGAAGAATACATCTTTCCATGCATCAAATTATGCTCAAAACTTGCCAACCTATGCCTGGAAACTCTGGAGAGAAGGTACACCATTAGAATTGGTGGACCCTAGTGTAAGACATTCTTGTTCAAGCAATGAAGTTATTAAATGCATCCATATGAGCTTTTTGTGTATCCAGGAAAATCCAGCTCTAAGACCTGCGATACAATTTATTATGGTGATGCTAAACAGTCATTCCGTCACCCTGCCAGATCCTCACGAGCCAGCATTTTTGTTTGATCCCCATAGAACAGATTCAAACAGTCTAGCAATTTTCGAGGATAGCTTGGATCAATCTACAAATAAGTCTATGCAACGGTCTGTGGATGAAGATCCAATTTCTGACATGTATCCTCGTTAG 1968 0.4309 MDSIKAFLLLALLIFFIARIKAQEPEVDCSGPTYAPNSTYHSNLNRLLSTLSLNANSIGGFYNTTVGQNDDAVYGLYLCRGDTTVSACQACVSRATKDIRQCLNYTEAAGWYDKCMLRYSDADFFSIEQDDPTRVLYNNGNATDPKSFMQLVIDTMNAVAREAAYRGGGGSKKFATKEKNYSSFQTLYTMAQCTPDISRDDCYNCLRRTIGEYPNCCFGRLGAIARAFSCNVRYELYPFYGVISSLPSPRVPESAFTSNDKGKISGRTVIAIVVQTAIAVLQASFCFLCLRWWRARKNASVPKTGETSSVESLHFDLDTIKSATNDFSPDNKLGQGGYGEVYKGILPGGQELAVKRLSSSSKQGVLEFKNEVVTMAKLHHRNLVTFLGFCLDEEEKILIYEFLPNKSLDNFLFGLENTTKLNWSNRYKIIEGIARGILYLHEDSQLKIIHRDLKSSNILLDEDLNPKISDFGMARIFGTDQTQASTSKVVGTFGYIAPEYAVHGHISFKCDIYSFGILILEIISGKKNTSFHASNYAQNLPTYAWKLWREGTPLELVDPSVRHSCSSNEVIKCIHMSFLCIQENPALRPAIQFIMVMLNSHSVTLPDPHEPAFLFDPHRTDSNSLAIFEDSLDQSTNKSMQRSVDEDPISDMYPR 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4884g00028 655 FunFam Cysteine-rich receptor-like protein kinase 10 293 402 - -
Pral4884g00028 655 ProSiteProfiles Gnk2-homologous domain profile. 22 124 IPR002902 -
Pral4884g00028 655 FunFam cysteine-rich receptor-like protein kinase 10 403 605 - -
Pral4884g00028 655 Pfam Protein kinase domain 330 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4884g00028 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Pral4884g00028 655 Gene3D - 132 239 IPR038408 -
Pral4884g00028 655 Gene3D - 25 124 IPR038408 -
Pral4884g00028 655 SMART serkin_6 327 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4884g00028 655 Pfam Salt stress response/antifungal 140 237 IPR002902 -
Pral4884g00028 655 Pfam Salt stress response/antifungal 29 121 IPR002902 -
Pral4884g00028 655 Gene3D Phosphorylase Kinase; domain 1 291 402 - -
Pral4884g00028 655 SUPERFAMILY Protein kinase-like (PK-like) 309 598 IPR011009 -
Pral4884g00028 655 ProSiteProfiles Protein kinase domain profile. 327 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4884g00028 655 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 23 124 - -
Pral4884g00028 655 CDD STKc_IRAK 333 599 - -
Pral4884g00028 655 MobiDBLite consensus disorder prediction 634 655 - -
Pral4884g00028 655 FunFam Cysteine-rich receptor-like protein kinase 10 132 239 - -
Pral4884g00028 655 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 33 635 - -
Pral4884g00028 655 ProSiteProfiles Gnk2-homologous domain profile. 130 239 IPR002902 -
Pral4884g00028 655 Gene3D Transferase(Phosphotransferase) domain 1 403 606 - -
Pral4884g00028 655 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4884g00028 Pral-Chr4884 266539 270366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4884g00028 9 655 Receptor kinase-like Gene Family AT4G05200 45.727 0.0 579
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral4884g00028 Pkinase 9.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4884g00028 - - tcc:108662469 651.358