Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4884g00013 ATGTCCTTCCCCAAATTCTCTGCAACGCATTTCATCCTTCTCACTCTGCTTCCATTTCTGAGTTTCACAAGCGAAGCATCTCCTATCTTCAGCAGCAAAGCCTGTACGGACTCACTCACATACAAACCCAATAGCCCATTTGAAGCTAATTTGAATGTCCTCCTCTCTGTTCTTACCTCCAACGCCTCCCTCCACGACGGTTTCTACCGTACCACGTTGGATCAGGGAACTCCCGCCGTCATCAACGGCCTCTTCCTCTGCCGCGGGGATGCCACCCCCACACTGTGTCAAGAGTGCGTCTCCGACGCCGCCAAAGAGATAAGGCGCCAGTGTCCAAACCAAACGGAGTCTATCGTCTGGTACGATGTTTGTATGCTTCGTTACTCGAACAACACCTTCAACAACATCGTCCCTTCCACGGACTTATCGAGTAACGGTACTATAGCTAGCGCCGAACAGGATCAGTTCAATAAATTGTTGTCGGATTTGTTGCAAAAATTGGCGGCAGAAGCTCAGGGTTCCCAGACGGGGAAAAAATTTGCCACGGGACAAGTGAACCCAACATCGTCACAAACGTTGTACGGCCTTTTACAGTGTTACCCAGACCTGACATCTTTTGATTGCAACATGTGTCTCCAAAGCGCCATTGGAGCTCTGCCAAATTGCTGTGGCAACAAGAAGGGGGCAACGGTTCTTCTTCCGGCATGTAACATTAGATATGAACTTTACCCATTTTACAGCATAACTACATCTTCTGCAGGGCCAGGTCCTCCTCGATCAGGAAAAAGCAAAATCGCAATAATTGTTGCGATTATTGTGCCGATTGTTGTTTCTGTGACACTCTTTGTTGCGGCTTGCTGTTTCCTGCGTAAGAGGGCTAGCAAGGGCAAGAAGTTTAATACTTTCGCAGAGGATGACATGGGGAATGATCTTACAGACACAGAGTCTCTGCAATTTGAATTGGCGACAATAGAAGCTGCCACAAAAAGGTTCTCAGACGAGAACAAGATTGGCCAAGGTGGATTTGGTGCAGTTTATAAGGGTATCCTCCCAAGCGGACAGGAGATTGCTGTGAAGAGGTTATCAGTAACCTCCTTGCAGGGTGCTTTGGAATTTAAGAATGAAGTTGCTCTTGTAGCCAAGCTTCAACATAGGAATTTAGTGAGGCTGTTGGGTTTTTGCTTGGAGGGGCAAGAGAAGATACTTGTTTATGAATACATCCCAAACAAAAGCCTTGATCACTTTCTATTTGACTCTGAAAAGAAAACAATGCTTGATTGGTCAAGGCGTTACAAGATCATAATGGGAATTGCTCGAGGAATTCTTTATCTTCATGAAGATTCTCAGCTTAGAATAATACATCGTGATCTCAAAGCGAGTAATGTTTTATTAGACACCAATATGAATCCAAAAATTTCAGATTTTGGTATGGCAAAAATCTTTCACGGAGATCAAACTCAAGTGAACACAGGAAGAATAGTTGGAACCTTTGGTTATATGTCTCCAGAATATGCAATGCGTGGGCAATTTTCTGTTAAATCAGATGTGTTCAGCTTTGGTATATTAGTTTTGGAGATTGTTACTGGTAAGAAGAACACTGATTTTAATCAATCACGTCAAGCAGATGACCTCTTAAGCTACGCCTGGGATAACTGGACACAAAGAACACCTTTGGAGTTATTGGATCCAACACTGAGAGGTTCTTATTCAAGAAATGAAGTCATAAGATGCATTCATATTGCTTTATTATGTGTTCAGGAGAATCCTTCTGATAGACCTTCAATGGCAACTATAGCACTGATGCTCAACAGTTATTCTGTTACTTTGTCAATACCTCGACAGCCAGCAGCTTTCATGCGCAGAACACCAAACAGGCAAAAGCAAAACAATGTTGTTGATTCTGACCAATCTACCTGTTCAATCCTATGGTCTACAAATGAAGCATCCATTACTGAAGTTTACCCCCGATAA 1971 0.4353 MSFPKFSATHFILLTLLPFLSFTSEASPIFSSKACTDSLTYKPNSPFEANLNVLLSVLTSNASLHDGFYRTTLDQGTPAVINGLFLCRGDATPTLCQECVSDAAKEIRRQCPNQTESIVWYDVCMLRYSNNTFNNIVPSTDLSSNGTIASAEQDQFNKLLSDLLQKLAAEAQGSQTGKKFATGQVNPTSSQTLYGLLQCYPDLTSFDCNMCLQSAIGALPNCCGNKKGATVLLPACNIRYELYPFYSITTSSAGPGPPRSGKSKIAIIVAIIVPIVVSVTLFVAACCFLRKRASKGKKFNTFAEDDMGNDLTDTESLQFELATIEAATKRFSDENKIGQGGFGAVYKGILPSGQEIAVKRLSVTSLQGALEFKNEVALVAKLQHRNLVRLLGFCLEGQEKILVYEYIPNKSLDHFLFDSEKKTMLDWSRRYKIIMGIARGILYLHEDSQLRIIHRDLKASNVLLDTNMNPKISDFGMAKIFHGDQTQVNTGRIVGTFGYMSPEYAMRGQFSVKSDVFSFGILVLEIVTGKKNTDFNQSRQADDLLSYAWDNWTQRTPLELLDPTLRGSYSRNEVIRCIHIALLCVQENPSDRPSMATIALMLNSYSVTLSIPRQPAAFMRRTPNRQKQNNVVDSDQSTCSILWSTNEASITEVYPR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4884g00013 656 FunFam Cysteine-rich receptor-like protein kinase 10 140 245 - -
Pral4884g00013 656 Gene3D - 140 245 IPR038408 -
Pral4884g00013 656 Gene3D - 29 133 IPR038408 -
Pral4884g00013 656 ProSiteProfiles Gnk2-homologous domain profile. 136 245 IPR002902 -
Pral4884g00013 656 Gene3D Transferase(Phosphotransferase) domain 1 407 613 - -
Pral4884g00013 656 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 652 - -
Pral4884g00013 656 SUPERFAMILY Protein kinase-like (PK-like) 317 631 IPR011009 -
Pral4884g00013 656 CDD STKc_IRAK 337 603 - -
Pral4884g00013 656 FunFam cysteine-rich receptor-like protein kinase 10 407 609 - -
Pral4884g00013 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Pral4884g00013 656 Gene3D Phosphorylase Kinase; domain 1 293 406 - -
Pral4884g00013 656 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 133 - -
Pral4884g00013 656 SMART serkin_6 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4884g00013 656 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Pral4884g00013 656 Pfam Protein tyrosine and serine/threonine kinase 334 599 IPR001245 GO:0004672|GO:0006468
Pral4884g00013 656 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Pral4884g00013 656 ProSiteProfiles Protein kinase domain profile. 331 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral4884g00013 656 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 290 406 - -
Pral4884g00013 656 Pfam Salt stress response/antifungal 151 243 IPR002902 -
Pral4884g00013 656 Pfam Salt stress response/antifungal 35 130 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4884g00013 Pral-Chr4884 86521 89998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4884g00013 5 656 Receptor kinase-like Gene Family AT4G05200 48.744 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral4884g00013 PK_Tyr_Ser-Thr 4.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4884g00013 - - gmx:100788416 882.863