Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4884g00003 ATGGATATCATAAAACAGACCAAGAAATCCACAACCACAGGTCGCAAGAAGATCGAGATAAAGGAGATAGACAAGGACTCCAACAAACAAGTCACCTTCTCAAAACGACGCACCGGACTGTTCAAGAAAGCCAGCGAGCTCTGCGTCCTGTGCAATGCTCAGATCGCCATGATCGTGTTCTCACCGGCCGACAAAGCCTTTTGCTTTGGCCAACCCAACGTCGAAGCCGTCCTCCGCCGCTACCTCCGTGGTGGAGCAGAAGATAATCACGACGCTAGCGACTTCAGTTCGGCGTCTTACGAAGAACTTAACAGACAACACGAAGAAGCAGCGAGGGCATTGGAGATGGAGAAGCAGCAACTGGAGGAGATCGAGAATGTGGCTAAGGTATGGAATAGAGGGAACTGGTGGGACGAACCGATTGATGAGATGGATTTGGATGAGTTAGAGCAATATGTGGCGGCCATGCATGAGTTAAGAAGAAAGGTGGCTGAGAAGGCCGATGAGTTAATGAGGGTTTCGATAATGCCGTCGGTGCCATCGTTTTATGGAGAAAGTTCATTGGGTGGTCTTCTTATCGGAGGCGGCGGAGGCTATGGTGGTTTTCCTAACCAGTTTGGCGGCGGCCTTGTTGCTTATCATGACAAGTTTGAATTTTGA 660 0.497 MDIIKQTKKSTTTGRKKIEIKEIDKDSNKQVTFSKRRTGLFKKASELCVLCNAQIAMIVFSPADKAFCFGQPNVEAVLRRYLRGGAEDNHDASDFSSASYEELNRQHEEAARALEMEKQQLEEIENVAKVWNRGNWWDEPIDEMDLDELEQYVAAMHELRRKVAEKADELMRVSIMPSVPSFYGESSLGGLLIGGGGGYGGFPNQFGGGLVAYHDKFEF 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4884g00003 219 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Pral4884g00003 219 Gene3D - 25 128 IPR036879 GO:0003677|GO:0046983
Pral4884g00003 219 SUPERFAMILY SRF-like 14 84 IPR036879 GO:0003677|GO:0046983
Pral4884g00003 219 Coils Coil 149 169 - -
Pral4884g00003 219 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Pral4884g00003 219 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Pral4884g00003 219 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Pral4884g00003 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Pral4884g00003 219 Coils Coil 97 127 - -
Pral4884g00003 219 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Pral4884g00003 219 PANTHER MADS BOX PROTEIN 15 165 - -
Pral4884g00003 219 CDD MADS_MEF2_like 14 82 IPR033896 GO:0000977|GO:0045944
Pral4884g00003 219 FunFam Agamous-like MADS-box protein AGL62 25 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4884g00003 Pral-Chr4884 31993 32652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4884g00003 12 198 Type I MADS-box Gene Family AT5G60440 36.598 2.83e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4884g00003 SRF-TF 1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4884g00003 - - pcin:129286086 352.829