Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4884g00002 ATGGCGATGAACAAAAAGTGTAGCTCAGGTCGTCAAAAGATTCCGATCGAGAAAATACCAAAGAAAAGTAATTTGCAAGTTACATTCTCCAAGCGCCGTTCAGGATTGTTCAAGAAAGCCAGTGAACTTTGCACGCTTTGTGGGATAGAAATCGCCATGATAGTATTCTCTCCAGCTAACAAAGCTTTCTCTTTTGGCCACCCAGGAGTTGAATCCATAATCGATCGTTACCTAGCTGCTCGAAAATCTACTTCGCATGCAGACCCATCGTCATCAACAGCAATCACTAGTGCTCATCGGAATTCTAATGTTTGTAATCTCAATTTGCAGTTAACACAGATTCTTAACCAGTTGGAGGTGGAGAAGAAGAGAGGAGAAGAACTCGATCGAACGAGGAAGGCGAGGCAGAGAGAGTTCTGGTGGGAGAGTCCAATCGATGAGATCGGTTCAGTTGATCAGTTGCAGCAATTGAGGATTGCAATGGAGGAACTTAAGAAGGATGTTTTAAGGCAGAAGAGTTTTGCGTCTTGTTCATCACACATTAATTTCGGGGAAGATTATGGATCGTTTGGACGTTACGATGACGTCTTTGAAAACAAATTATTATTAGGTGGTGCTGAGAATATTAATGTTGCTGCTAATTCGTCCAGTGTTGTTCCTGATGATGCCTTTAATAACCTTATTTACCAAAACCACGACATGGGGATCTTTAAGTTTACTTCTCAGTTCTGA 732 0.4167 MAMNKKCSSGRQKIPIEKIPKKSNLQVTFSKRRSGLFKKASELCTLCGIEIAMIVFSPANKAFSFGHPGVESIIDRYLAARKSTSHADPSSSTAITSAHRNSNVCNLNLQLTQILNQLEVEKKRGEELDRTRKARQREFWWESPIDEIGSVDQLQQLRIAMEELKKDVLRQKSFASCSSHINFGEDYGSFGRYDDVFENKLLLGGAENINVAANSSSVVPDDAFNNLIYQNHDMGIFKFTSQF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4884g00002 243 Coils Coil 151 171 - -
Pral4884g00002 243 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Pral4884g00002 243 SUPERFAMILY SRF-like 10 82 IPR036879 GO:0003677|GO:0046983
Pral4884g00002 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Pral4884g00002 243 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Pral4884g00002 243 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Pral4884g00002 243 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Pral4884g00002 243 Gene3D - 92 176 - -
Pral4884g00002 243 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Pral4884g00002 243 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Pral4884g00002 243 PANTHER MADS BOX PROTEIN 11 171 - -
Pral4884g00002 243 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Pral4884g00002 243 Gene3D - 21 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4884g00002 Pral-Chr4884 28622 29353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4884g00002 8 169 Type I MADS-box Gene Family AT2G24840 53.939 3.20e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4884g00002 SRF-TF 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4884g00002 - - pcin:129286085 384.03