Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4884g00001 ATGTCGACTTCAAGGAGGAGCAAGGGTCGCCAGAAGATTGAGATGAAGAAGATGAGCAATGAGAGCAACCTGCAGGTAACTTTCTCGAAGCGTCGCACTGGGCTTTTCAAGAAAGCTAGTGAGCTATGTACTCTTTGTGGTACTGAGGTTGCTCTCATCGTCTTCTCCCCCGGAGATAAGGTCTTCTCCTTCGGCCATCCCAGCGTCGACACCGTGGTGGATCGCTACCTCACGCGAGCCCCACCGCCACAGACCTCCGGCACCATGCAACTCATCGAGGCTCACCGCAACGCCAACGTTCGCGACCTGATCACCCAGTTCACTCAAGTCTCTGCCCAGCTAGACAACGAGAAGAAGCGCACTGATGAATTGAATCATATGCGAAAGGCCACTCAAGGTCAGTGCTGGTGGGCGGCCCCAATAGAGGAGATGACGAGGTCACAGCTTGAGGAGTTCAAGGCGGCGTTGGAGGAGCTAAAGAGGAGTGTGACGAGACAGGCTGATAGGATGGTGCTGATCCAGAGTGCAAGTAATAACTCATCGAATCAGTTTTGGTCGGAGGTTCATCTTCGAATGCGGTGGCTCCGCCGCCTCCACTGCCACATCAGTTGTTTCAGCCACCGCCAGCGGTGGTTCAAAATCCTCCTGGGTTTGATGGCAGTATGGTGCCACCACACCATGGATTTGGAGCACCAGGGTTTTACTGATCAATGA 714 0.5392 MSTSRRSKGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCGTEVALIVFSPGDKVFSFGHPSVDTVVDRYLTRAPPPQTSGTMQLIEAHRNANVRDLITQFTQVSAQLDNEKKRTDELNHMRKATQGQCWWAAPIEEMTRSQLEEFKAALEELKRSVTRQADRMVLIQSASNNSSNQFWSEVHLRMRWLRRLHCHISCFSHRQRWFKILLGLMAVWCHHTMDLEHQGFTDQ 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4884g00001 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Pral4884g00001 237 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Pral4884g00001 237 MobiDBLite consensus disorder prediction 1 20 - -
Pral4884g00001 237 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Pral4884g00001 237 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Pral4884g00001 237 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Pral4884g00001 237 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Pral4884g00001 237 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Pral4884g00001 237 Coils Coil 142 169 - -
Pral4884g00001 237 Gene3D - 20 86 IPR036879 GO:0003677|GO:0046983
Pral4884g00001 237 PANTHER MADS BOX PROTEIN 10 166 - -
Pral4884g00001 237 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Pral4884g00001 237 SUPERFAMILY SRF-like 9 94 IPR036879 GO:0003677|GO:0046983
Pral4884g00001 237 Gene3D - 87 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4884g00001 Pral-Chr4884 25203 26005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4884g00001 5 181 Type I MADS-box Gene Family AT5G60440 57.527 2.66e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4884g00001 SRF-TF 2.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4884g00001 - - minc:123214791 244.202