Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4882g00019 ATGGAGCCTAGTGAGATAATCTCTCAAGAATGGAGCTACCTTAGTGGGGTTTACACTGCTCAGGAAGCTGAGTTTATGACCCAGTTTCTTGAAAACTGTTCAGTCCCAGAGGATCTCTATGGAAATGCCAACTTGGGATTTCAATCTTCTTCTGCATTTTGGCCTACAGGCTTCACTGGTGACAGCTTCTATTTTCCTTCAAATGTTGCTGATGCTACCAATAATTTTGGTTCCATATCAATGTCCCGTGAAGTACAAGTTTCTGAACCAGCACAGGAGGATGGTAAAACCAGCAACCTGCAGAACTCTGGAAAGAGATCAAGGAGCTCATTTGAGAAGAACAAGAGGAATGTTAAACCAAGGAGGAATCCAGAGTCTTTTAAAAGCAACAAGGAAGAGAATAGAAGCAATGGTGGCCTTCATGGGCACAACTCTAGCAGCTTCTGCTCATCAGAGGATGATTCCACTGCTTCTCAGGAGGATGACACAGACCCTAAAAACAATAAAGATCTTAACTCAAACAGCAAATCAAGATCTGACAAAGGTCCTGCCACTGATCCCCAGAGCCTCTATGCAAGAAGAAGAAGAGGGAGAATAAATGAAAGGTTGAGAATCTTACAAAACCTTGTCCCTAATGGAACGAAGGTGGATATAAGCACTATGCTTGAGGAAGCTGCTCAATATGTGAAATTTTTACAGCTACAAATTAAGCTTCTTAGCTCTGATGATCTATGGATGTACGCTCCGATTGTTAACAATGGATTGAATATTGGACTAGACCTCAATTTCACTCCAACTAAACAGGCATAA 810 0.4173 MEPSEIISQEWSYLSGVYTAQEAEFMTQFLENCSVPEDLYGNANLGFQSSSAFWPTGFTGDSFYFPSNVADATNNFGSISMSREVQVSEPAQEDGKTSNLQNSGKRSRSSFEKNKRNVKPRRNPESFKSNKEENRSNGGLHGHNSSSFCSSEDDSTASQEDDTDPKNNKDLNSNSKSRSDKGPATDPQSLYARRRRGRINERLRILQNLVPNGTKVDISTMLEEAAQYVKFLQLQIKLLSSDDLWMYAPIVNNGLNIGLDLNFTPTKQA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4882g00019 269 CDD bHLH_AtIND_like 184 246 - -
Pral4882g00019 269 MobiDBLite consensus disorder prediction 84 107 - -
Pral4882g00019 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 246 IPR036638 GO:0046983
Pral4882g00019 269 SMART finulus 189 238 IPR011598 GO:0046983
Pral4882g00019 269 MobiDBLite consensus disorder prediction 139 154 - -
Pral4882g00019 269 MobiDBLite consensus disorder prediction 108 138 - -
Pral4882g00019 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Pral4882g00019 269 Gene3D - 186 246 IPR036638 GO:0046983
Pral4882g00019 269 MobiDBLite consensus disorder prediction 160 176 - -
Pral4882g00019 269 FunFam Basic helix-loop-helix transcription factor 184 241 - -
Pral4882g00019 269 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 45 248 - -
Pral4882g00019 269 MobiDBLite consensus disorder prediction 84 196 - -
Pral4882g00019 269 Pfam Helix-loop-helix DNA-binding domain 193 233 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4882g00019 Pral-Chr4882 103261 104576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4882g00019 97 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 55.676 1.06e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4882g00019 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4882g00019 - - pcin:129285148 362.459