Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4882g00016 ATGGCTTTAGAGGCTCTCAATTCTCCCACTACTGCTCCGACTTCTTTCACCTACAAGCACGAGGAAGAAGACGAGGAGCTTGATCTTCACTGGGCTAAGGGCAAGCGAACCAAACGACCTCGTTTTGACTCCAATAACCCTCCTTCTGAGGAAGAGTACCTTGCTCTCTGTCTCATAATGCTCGCCCAAAGCGGCCACAACAACAACGCCGCCGCCTCCTCCTCCTCCTCTCCGCCGCGTCCTTCTCCTTCACCGTCGCCTCCTAATCCTGTGAAGCCCTCTCATAGGTGTACCGTCTGCAATAAAGTCTTCTCCTCTTACCAAGCGCTCGGGGGCCACAAGGCGAGCCACCGTAAGTCCTCCTCGGAGTCCACCGCCAACGCTTCCACCGCCGCCGACAACGCTTCCACTTCCTCTGGTGCTGGCACAGGAAGGATGCACGAGTGTTCCATCTGTCACAAGGTCTTCCCTACCGGTCAGGCCTTGGGTGGACACAAGAGATGCCACTACGACGGCGGCAACGCAAACAGCAGCAGCGCCGGCGCCGGTGTGTCCTCATCGGAGGGAGGCGCTGCGTCTACTGTAAGCCTCCGCGGGTTCGACCTAAACCTGCCGGCACCGCTGATGGACTTATCCCCGGCAGGATTCGGAGACGAATCTGGGATGAAGATGGGCGTAGAGCAAGAGGTGGAGAGTCCGTTGCCGGTAGGAGCCGGCAAGAAGAGAAGTCGGGTGCTTTTTCCGAGTGAAGCAGACGATGTAAAGCCACCGTCGTCTGCGTTGTTGCAGAATTGA 795 0.5774 MALEALNSPTTAPTSFTYKHEEEDEELDLHWAKGKRTKRPRFDSNNPPSEEEYLALCLIMLAQSGHNNNAAASSSSSPPRPSPSPSPPNPVKPSHRCTVCNKVFSSYQALGGHKASHRKSSSESTANASTAADNASTSSGAGTGRMHECSICHKVFPTGQALGGHKRCHYDGGNANSSSAGAGVSSSEGGAASTVSLRGFDLNLPAPLMDLSPAGFGDESGMKMGVEQEVESPLPVGAGKKRSRVLFPSEADDVKPPSSALLQN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4882g00016 264 MobiDBLite consensus disorder prediction 111 143 - -
Pral4882g00016 264 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Pral4882g00016 264 SMART c2h2final6 95 117 IPR013087 -
Pral4882g00016 264 SMART c2h2final6 147 169 IPR013087 -
Pral4882g00016 264 MobiDBLite consensus disorder prediction 1 49 - -
Pral4882g00016 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Pral4882g00016 264 Pfam C2H2-type zinc finger 147 171 - -
Pral4882g00016 264 Pfam C2H2-type zinc finger 95 119 - -
Pral4882g00016 264 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Pral4882g00016 264 MobiDBLite consensus disorder prediction 78 92 - -
Pral4882g00016 264 MobiDBLite consensus disorder prediction 121 143 - -
Pral4882g00016 264 SUPERFAMILY beta-beta-alpha zinc fingers 95 169 IPR036236 -
Pral4882g00016 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 169 IPR013087 -
Pral4882g00016 264 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 206 IPR044653 GO:0003700
Pral4882g00016 264 Gene3D Classic Zinc Finger 93 169 - -
Pral4882g00016 264 MobiDBLite consensus disorder prediction 17 46 - -
Pral4882g00016 264 MobiDBLite consensus disorder prediction 229 264 - -
Pral4882g00016 264 MobiDBLite consensus disorder prediction 67 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4882g00016 Pral-Chr4882 85332 86639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4882g00016 1 214 C2H2 Transcription Factor Family AT5G67450 43.701 5.10e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4882g00016 zf-C2H2_6 9.2e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4882g00016 - - gmx:100806788 246.514