Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4880g00006 ATGGAGGACGACGACGGCTTCCACGGGGACCACCTTCTGACCCCAACCTCCAGTTTCTCTCAGCTTCTTTTCGGACATGGCGATGTGGACCACCTCCCCCATCATCATCACTCTCTTTTCTCGATTGGCAACGGCAGTCCCCCCAAAATGCTCTGTTTCGAGGGCTATCGAAACAGTCATGGCGACCTCTTGGTTTCTGAACCCAACGCTGTTACCCCACAGAAATCTGTCATCACTTCTAGCGAATCCTCCTCTGCTTCTTCCTCCTGCAACCATAAGTCTAATGTCCGCGATATGAAAAAACGTGGTGGGTCGGCACAGGAAATGGGGTGCTGCACTGATTCCGGCGCCACGGCGGCTGGTGGCGGTGGCCGGAGACATTCGAAGAAAGCCAGAGCGGAGAACCCCACTTCAACAGGACATGCAAAGAGGAAGGAGAAACTTGGGGAGCGAATCGCAGCGTTACAACAGCTCGTTTCTCCATTTGGGAAGACAGATACAGCTTCGGTGCTTCACGAGGCAATGGGATACATAAGGTTTCTCCACGACCAAGTTCAGGTCCTCTGCTCGCCTTACTTGCAGGCACCTCCTCCTTCGCCTCATCCCCGCCACCACCGTACGGGAGATGGGGTTAACATGAACAAGAGACAGGAAGGCAAAGGAGAGTTGAGTAGCAGAGGACTATGTCTGATCCCAGTGGAATCCACCGTACACGTGGCCAGCAGTAATGGTGCTGATTTCTGGTCACCTGCGATGGGGATTAACGTTTCCTCATCAACAAGATCCTGA 789 0.5361 MEDDDGFHGDHLLTPTSSFSQLLFGHGDVDHLPHHHHSLFSIGNGSPPKMLCFEGYRNSHGDLLVSEPNAVTPQKSVITSSESSSASSSCNHKSNVRDMKKRGGSAQEMGCCTDSGATAAGGGGRRHSKKARAENPTSTGHAKRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQAPPPSPHPRHHRTGDGVNMNKRQEGKGELSSRGLCLIPVESTVHVASSNGADFWSPAMGINVSSSTRS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4880g00006 262 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 238 - -
Pral4880g00006 262 MobiDBLite consensus disorder prediction 202 222 - -
Pral4880g00006 262 MobiDBLite consensus disorder prediction 116 146 - -
Pral4880g00006 262 CDD bHLH_AtbHLH_like 143 188 IPR045239 -
Pral4880g00006 262 Gene3D - 128 194 IPR036638 GO:0046983
Pral4880g00006 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 181 IPR011598 GO:0046983
Pral4880g00006 262 MobiDBLite consensus disorder prediction 74 102 - -
Pral4880g00006 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 198 IPR036638 GO:0046983
Pral4880g00006 262 MobiDBLite consensus disorder prediction 196 224 - -
Pral4880g00006 262 MobiDBLite consensus disorder prediction 127 146 - -
Pral4880g00006 262 FunFam Transcription factor bHLH113 125 195 - -
Pral4880g00006 262 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4880g00006 Pral-Chr4880 46986 49423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4880g00006 143 259 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 51.220 7.41e-35 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4880g00006 - - pcin:129287021 323.168