Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4880g00005 ATGGAGGACGACGACGGCTTCCACGGGGACCACCTTCTGACCCCAACCTCCAGTTTCTCTCAGCTTCTTTTCGGACATGGCGATGTGGACCACCTCCCCCATCATCATCACTCTCTTTTCTCGATTGGCAACGGCAGTCCCCCCAAAATGCTCTGTTTCGAGGGCTATCGAAACAGTCATGGCGACCTCTTGGTTTCTGAACCCAACGCTGTTACCCCACAGAAATCTGTCATCACTTCTAGCGAATCCTCCTCTGCTTCTTCCTCCTGCAACCATAAGTCTAATAAAAAACGTGGTGGGTCGGCACAGGAAATGGGGTGCTGCACTGATTCCGGCGCCACGGCGGCTGGTGGCGGTGGCCGGAGACATTCGAAGAAAGCCAGAGCGGAGAACCCCACTTCAACAGGACATGCAAAGAGGAAGGAGAAACTTGGGGAGCGAATCGCAGCGTTACAACAGCTCGTTTCTCCATTTGGGAAGACAGATACAGCTTCGGTGCTTCACGAGGCAATGGGATACATAAGGTTTCTCCACGACCAAGTTCAGGTCCTCTGCTCGCCTTACTTGCAGGCACCTCCTCCTTCGCCTCATCCCCGCCACCACCGTACGGGAGATGGGGTTAACATGAACAAGAGACAGGAAGGCAAAGGAGAGTTGAGTAGCAGAGGACTATGTCTGATCCCAGTGGAATCCACCGTACACGTGGCCAGCAGTAATGGTGCTGATTTCTGGTCACCTGCGATGGGGATTAACGTTTCCTCATCAACAAGATCCTGA 777 0.5354 MEDDDGFHGDHLLTPTSSFSQLLFGHGDVDHLPHHHHSLFSIGNGSPPKMLCFEGYRNSHGDLLVSEPNAVTPQKSVITSSESSSASSSCNHKSNKKRGGSAQEMGCCTDSGATAAGGGGRRHSKKARAENPTSTGHAKRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQAPPPSPHPRHHRTGDGVNMNKRQEGKGELSSRGLCLIPVESTVHVASSNGADFWSPAMGINVSSSTRS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4880g00005 258 MobiDBLite consensus disorder prediction 198 218 - -
Pral4880g00005 258 FunFam Transcription factor bHLH113 121 191 - -
Pral4880g00005 258 CDD bHLH_AtbHLH_like 139 184 IPR045239 -
Pral4880g00005 258 MobiDBLite consensus disorder prediction 74 96 - -
Pral4880g00005 258 MobiDBLite consensus disorder prediction 123 142 - -
Pral4880g00005 258 MobiDBLite consensus disorder prediction 192 220 - -
Pral4880g00005 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 194 IPR036638 GO:0046983
Pral4880g00005 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983
Pral4880g00005 258 MobiDBLite consensus disorder prediction 74 142 - -
Pral4880g00005 258 Gene3D - 124 190 IPR036638 GO:0046983
Pral4880g00005 258 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4880g00005 Pral-Chr4880 46986 49423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4880g00005 139 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 51.220 6.58e-35 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4880g00005 - - pcin:129287021 318.546