Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4879g00008 ATGAATACAGATTCGGCAACAATGGAGGCGCAACAGAGAGATGTGGATCGGGTCAAGGGACCATGGAGTCCCGAGGAGGATGAATTGTTGCGCAAGCTCGTGCAACGCTACGGCCCTCGGAATTGGTCCGCCATAAGCAAATCAATACCGGGCAGGTCCGGGAAGTCTTGTCGTCTGCGGTGGTGCAACCAGCTCTCGCCGGACGTGGAGCACCGGTCCTTCACGCCGGAGGAAGACGAGATCATCATCAAGGCCCACTCAAAGTTCGGCAACAAGTGGGCCACCATAGCGAGGCTCCTGAACGGCCGTACGGACAACGCGATCAAAAACCATTGGAACTCTACCTTGAAGCGCAAGTACTCGTCGTTGATCGCCGACGAAGGCGCCACAATCGACGGACCTCCGGAAAAGAAATCAGCCATCGTGGAATACGCTATGCCGATACAATCATTGCCGCCGGGTGGCCACTGTTACAGCCCAAGCAGTCCATCAGGATCTGATGTTAGTGATTCAGGTCTTCCTGTGGTTTCATCTTCGATGGCGATTCGTCCTGTAGCGAGAAACTGCGCAGTCTTATCGCCTTCACTGCAGGTCGAGTCACGCCCAAGTCCAATCTTCAACTTAAACAAAGACCCTTGCACTGATCTTAGTCTGTCCCCTTTGGGAGCCGAGTTGAAGGAGTCGCAGAAGATTCAGAATCCCGGTTCCAGGGCGGAGGCACCAGCGCAGTCCGAGAAGTTGTCGTCAATGGCGACATTTGGGCCTGATTTACTGATGGTGATGAAGGAAATGATAAGGGAGGAAGTGAGAAATTACATGGCGGGACATCACGATGGATTGTGCTCTGATCCTGACGGTGTGAGTGGTGGAATTTCAAGGGTAAATTGA 888 0.5338 MNTDSATMEAQQRDVDRVKGPWSPEEDELLRKLVQRYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPDVEHRSFTPEEDEIIIKAHSKFGNKWATIARLLNGRTDNAIKNHWNSTLKRKYSSLIADEGATIDGPPEKKSAIVEYAMPIQSLPPGGHCYSPSSPSGSDVSDSGLPVVSSSMAIRPVARNCAVLSPSLQVESRPSPIFNLNKDPCTDLSLSPLGAELKESQKIQNPGSRAEAPAQSEKLSSMATFGPDLLMVMKEMIREEVRNYMAGHHDGLCSDPDGVSGGISRVN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4879g00008 295 CDD SANT 73 116 IPR001005 -
Pral4879g00008 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 120 IPR017930 -
Pral4879g00008 295 MobiDBLite consensus disorder prediction 1 22 - -
Pral4879g00008 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 69 IPR017930 -
Pral4879g00008 295 FunFam MYB transcription factor 19 70 - -
Pral4879g00008 295 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Pral4879g00008 295 FunFam Transcription factor MYB44 73 119 - -
Pral4879g00008 295 PANTHER MYB PROTEIN-RELATED 19 227 - -
Pral4879g00008 295 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Pral4879g00008 295 CDD SANT 21 63 IPR001005 -
Pral4879g00008 295 MobiDBLite consensus disorder prediction 229 246 - -
Pral4879g00008 295 Gene3D - 73 119 - -
Pral4879g00008 295 MobiDBLite consensus disorder prediction 227 246 - -
Pral4879g00008 295 Gene3D - 18 70 - -
Pral4879g00008 295 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
Pral4879g00008 295 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Pral4879g00008 295 SMART sant 18 67 IPR001005 -
Pral4879g00008 295 SMART sant 70 118 IPR001005 -
Pral4879g00008 295 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4879g00008 Pral-Chr4879 45414 46777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4879g00008 16 274 MYB Transcription Factor Family AT5G67300 50.526 1.19e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4879g00008 Myb_DNA-binding 3.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4879g00008 K09422 - qsa:O6P43_031073 311.612