Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4877g00003 ATGTCTGAAGAGAAAGAAGCTCAGAAGCAGCAGCAGATGGGGTCTTTGGAGACTCAGTCACCGGGTCTCTTGAATCCCGACGAGAAATCATCAACCATGGCTCCATCTCCGATCATAGGAACCTCTTCCAACAACAATAATGACCCTCTCATTGCTGATGGTCAGACCCAACAAGCCGTCGACGAAAGAGTTAATGCTGATGAAGGTGATAAGGCGGCGGCGTCGATGAGGACAGCAAACCGAGGAGGAAAGAAGAGGATTACTGGTAAAACCACCGGAGGTGAAGGGAAAGATGGGAACGGAGCTGCTGGTGGCCGTGAAGCCGCCGGTGGTCACGATATGCACATATGGACAGAGAGAGAGAGGAGGAAGAAGATGAGAAACATGTTCGCCACCCTTCATTCGCTGCTTCCCCAGCTTCCTCCTAAGGCTGACAAATCAACCATTGTCGATGAAGCGGTGAGGTGCATTAAAAGCCTGGAGATCACACTGGAGAATCTGGAAAAGATAAAACAGGAAAGGCTGAGACAAGCCCAGCTGCAGTCTGCTTCAACCACCACCATTGCGGATGGCGGCCATTTTTTGAGTTTCAACTCTCAGCCGCATCCCACTGTGTCAAGGGAGGCATTCATGGCTGATCATGGATCTTCCATTATCCATAATTCAAGCAATAATAACCCCACAAACGCTATTACTATTGGAAGTTCAAATTCACTATCACTTCCCGGAGTTGTGAATAACCCAGTAGGGTTTCAGACTTGGTCCTCTTCAAATGTTGTGATCAACATTTGTGGTGATCAGGCTCAGTTCAATGTGTGCTCCCTCAAGAAGCCAGGCCTCTTCACCAGCATTTGTGCTGTGTTTGAGAAGTACAAGATAGAAGTTTTGTCTGCTCATGTTTCTTCTGATGATCGTCGATGCTTTTACATGATTCATGCACAGGCAAATGGAGGTCCGAATGAGTTTGAAGGGGCACTTTCAGCGGAGGAAACTTTCAGGCAAGCAGCTGGAGAAATGACGCTTTGGCTATCTTAA 1035 0.4792 MSEEKEAQKQQQMGSLETQSPGLLNPDEKSSTMAPSPIIGTSSNNNNDPLIADGQTQQAVDERVNADEGDKAAASMRTANRGGKKRITGKTTGGEGKDGNGAAGGREAAGGHDMHIWTERERRKKMRNMFATLHSLLPQLPPKADKSTIVDEAVRCIKSLEITLENLEKIKQERLRQAQLQSASTTTIADGGHFLSFNSQPHPTVSREAFMADHGSSIIHNSSNNNPTNAITIGSSNSLSLPGVVNNPVGFQTWSSSNVVINICGDQAQFNVCSLKKPGLFTSICAVFEKYKIEVLSAHVSSDDRRCFYMIHAQANGGPNEFEGALSAEETFRQAAGEMTLWLS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4877g00003 344 Gene3D - 106 178 IPR036638 GO:0046983
Pral4877g00003 344 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 18 343 IPR044278 GO:0003700|GO:0006355|GO:0009960
Pral4877g00003 344 SMART finulus 118 166 IPR011598 GO:0046983
Pral4877g00003 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 180 IPR036638 GO:0046983
Pral4877g00003 344 Coils Coil 150 177 - -
Pral4877g00003 344 Pfam Helix-loop-helix DNA-binding domain 115 161 IPR011598 GO:0046983
Pral4877g00003 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 160 IPR011598 GO:0046983
Pral4877g00003 344 CDD bHLH_AtbHLH_like 115 168 IPR045239 -
Pral4877g00003 344 MobiDBLite consensus disorder prediction 1 115 - -
Pral4877g00003 344 CDD ACT_UUR-ACR-like 269 308 - -
Pral4877g00003 344 MobiDBLite consensus disorder prediction 7 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4877g00003 Pral-Chr4877 22148 26016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4877g00003 88 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 42.652 1.69e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4877g00003 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4877g00003 - - rcu:8275281 248.44