Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4877g00002 ATGCCTGGGAGTCTAGAGCCGTTGGATTTGGGGATTCAGATTCCATACCACTTCAGGTGTCCGATCTCGCTCGAGTTGATGCGTGACCCCGTCACCGTCTGCACTGGTCAGACCTATGACCGAGCCAGCATCGAATCATGGGTAGCCACCGGCAACACCACCTGTCCCGTGACTCGGGCTCCGCTCACCGACTTCACTTTTATTCCCAACCACACTCTTCGCCGTCTCATCCAGGACTGGTGCGTCGCTAACCGGGCTTTCGGAATTGAGCGTATTCCGACTCCCAAACAACCCGCCGACCCCACCTTAGTTCGTTCCTTGCTGAATCAAGTCTCTTCCGAGTCGGCTCCGACTCATTCACGCATCTCTGCCTTGAGGCGACTCAAGGGACTCGCGCGTGACTCGGACAAGAATCGTTCTCTTATTGGCTCTCACAACGTTCGCGAAATCCTTCTCCATATTGTGTTCTCCGAACTCAATTCCGACTCTTCCGAGCTGAACCGCGAGTCCCTTGCTCTGCTTGTGTTGTTTCCACTCCCTGAGTCGGAATGCACCTCCGTCGCATCGGATCCGGATAAAATCAGGTATCTATCGCGCCTCCTGTCTCACACATCAATGGACGTCCGAGTCAACTCGGCAGCGCTCATCGAAATCGTTGTGGCCGGGACTCGTTCGTCGGAGCTCCGATCTCACATCAGCTGTATGGACGAAATCTACGAGGGGGTCATCGACATTTTGAAGAATCCAATCGCGTATCCTCGAGCTCTCAAGATCGGAATCAAGGCGTTGTTCGCTCTGTGCCTGGTGAAAGAGACGCGGGAAAAAGCGGTGACAGCCGGAGCACCGGAGATCCTCATCGAACGACTGGCAGATTTCGAGAAATGCGACGTGGAGAGGGCCCTGGCGACGATCGAACTGCTTTGTCGGATCCCGGCGGGGTGCGAGGCGTTTGCAGGGCACGCGCTGACGGTGCCGCTTCTGGTGAAGATAATACTGAAAGTGTCGGACAGAGCGACGGAGTACGCAGCGGGAGCCCTGCTGTCACTGTGCTCGGAATCGGAGCAAAGCCAGAGGGAGGCGGTGGCGGCGGGGGTGCTGACGCAGCTGCTGTTGCTGGTGCAGAGCGACTGCACGGAGAGAGCGAAGAAGAAGGCGCAACTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCTCAACAAGATTCCCTCGGAAACTCGGATGATTTTGCATGCAGCGAAGTCGTCGTAGCGCCCTTGTGA 1257 0.5664 MPGSLEPLDLGIQIPYHFRCPISLELMRDPVTVCTGQTYDRASIESWVATGNTTCPVTRAPLTDFTFIPNHTLRRLIQDWCVANRAFGIERIPTPKQPADPTLVRSLLNQVSSESAPTHSRISALRRLKGLARDSDKNRSLIGSHNVREILLHIVFSELNSDSSELNRESLALLVLFPLPESECTSVASDPDKIRYLSRLLSHTSMDVRVNSAALIEIVVAGTRSSELRSHISCMDEIYEGVIDILKNPIAYPRALKIGIKALFALCLVKETREKAVTAGAPEILIERLADFEKCDVERALATIELLCRIPAGCEAFAGHALTVPLLVKIILKVSDRATEYAAGALLSLCSESEQSQREAVAAGVLTQLLLLVQSDCTERAKKKAQLLLKLLRDSWPQQDSLGNSDDFACSEVVVAPL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4877g00002 418 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Pral4877g00002 418 SUPERFAMILY ARM repeat 103 392 IPR016024 -
Pral4877g00002 418 SUPERFAMILY RING/U-box 12 90 - -
Pral4877g00002 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Pral4877g00002 418 CDD RING-Ubox_PUB 15 67 IPR045210 -
Pral4877g00002 418 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Pral4877g00002 418 Gene3D - 88 408 IPR011989 -
Pral4877g00002 418 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Pral4877g00002 418 PANTHER WDSAM1 PROTEIN 12 399 IPR045185 GO:0061630
Pral4877g00002 418 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4877g00002 Pral-Chr4877 16574 18973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4877g00002 1 415 U-box Gene Family AT3G19380 69.194 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4877g00002 - - pcin:129284989 763.066