Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4873g00026 ATGGCCTGTCCTACATCAGAAGCCATTTCTCACATTATAGATATTATTTCTGAGTTGGTAGTCTGTGCTAGTGGTGTCCTTGTGAAGAATGATAGTTTCAAGGAGCTTGCAGCTTACATGGAAAGAATTGTACCAATCTTGAAAGAATTGAAGACAAAAAAAGTCAGTGATTCTGAGGCCTTTACCAATGCCATTGACGTTCTGAATCGTGAAATTAGAGATGCAAGACAATTTACTCAAGAATGCTGCCAGAAGAGCAAGGTATACCTCCTAGTGAATGGCATGTCAATCAAGAAGCGTTTACAGAAGACAATGCGTGAGATCAGCCGGACATTTGATCTTCTTCCTTTGGCCATGTCGGATCTTTCTTCTAACACAATTGAAGCAATTGGAAAGCTCTGTGATGATATGCAGAAAGCTGAGTTTAAGACAACTGTAGCAGAAGAGGAGATTTTGGAGAAAATTGAGTCAGGGATTCAGGAAAATGGCGTTGATCGCTGCTACGCTAATAATTTGCTGATCCAAATTGCTGTTGCTGTTGGGGCTACTACAGAGAGGTCAGCATTGAAGAAGGAACTTGAAGATTTTAAGATTGAAGTTGAAAATTGCCGCCTGAGGAAAGACGAGGTTGAAGCTATGTACATGGATCAGATCATTGCTTTGTTGGAAAGAGCTGATGCAGCATCATCGCCAAGGGAAAAGGAACTTAAATACCTTTCCAAGCGGAATTCTTTGGGCAGTCAAACATTGGAGCCTCTTCAATCATTTTATTGCCCCATAACCCAGGAAGTTATGGAGGACCCTGTTGAAACTTCATCAGGGAAGACATTTGAGAGAAGTGCAATAGAAAAATGGTTTGCTGAAGGAAATAAACGATGTCCTCTGACCATGACTCCTTTAGACACATCGGTTTTACGATCTAACAAAATCTTGAAACAATCAATAAAAGAATGGAAGGATAGAAATACGATGACAACAATTGTTTTGACAAAAGAAAAACTCCATTCAGAAGATGATGATGAAGTGCTACATTGTCTAGGAAATCTACAGGATTTGTGCGAACAGAGTGAACTGCACAGGGAATGGCTGATGCTGGAGAATTACATACCAGTTCTCATCCAGATTCTTGGTGCTAGAAAGCATGATGTAAGAAACCGGGCTCTAGCCATCCTTAACATGTTGGCAAAGGATAGTGATGATGCTAAGGAAAGAATTGCCAACATTGATAATGCAGCTGTATCTATTGTTCATTTACTTGGACGCCGTGCGGGGGAAAGGAAGCTGGCGGTGGCATTACTACTGGAATTATCCAAGTTGGATTTGGTGCGAGAGGAAATTGGAAAGGTTCAAGGTTCTATACTGCTACTTGTGGCTATGTCCGGCAGTGACGATAACGAAGCTGCCAGATATGCAAAGGAGCTTTTGGAGAATCTATCATACTCAGATAACAATGTTTTAAAGATGGCAAGGGCAAATTATTTCCAGCCTCTTGTACATCGTCTCTCCACAGGACCAGATGATGTGAAAATGATTATGGCAACAGCCCTTGCGGAAATGGAGTTAACCAACCTCAATAAAGCATCTGTGTTTGAAGGTGGTGTCCTGGATCCTCTTCTCCATTTAGTTTCACATTCTGATATTCAAGTGAAAACAGTGGCCATTAGGGCTTTGCGTAATCTATCCAGTTTGAAGGAAAATGGTCTGGAGATGATTCGACAAGGAGTGGTACGCCCCATGCTTGACCTTCTATTCCAGGCTGGCCTGCTATCCTTAAGTTTAAAGGAACACATATCAGCCATAATCATGCAACTTGCGGTTTCAACCATCTCTAAAGATGGCCAGGCACCAACGTTATTGTTAGAATCTGACGAAGATGCTTTAAAACTCTTCTCTTTAATTAGTTTCACGAGGCCCGATGTGCAGCAAAACATTTTACAGACCTTCTATGCGTTGTGTCAGTCCCCCTCAGCCTCATTTATCAGGGGCAAGTTAAGAGAGTGGTCAGTTTTTGAAGTTTTGGTTCAGCTCTGTCAGGAGGAGAATCTAAATCTACGGGCAAGTGCTGTAAAGCTGTTTGCTTACTTGGTGTGCGATGAAGCCAGCATCCCGGAAAACGTAAATCAGAAATGTGCTGAAGCTATGCTCCAGATCCTGAGATCTTCTTCAGATGAAGAGGAAATTTCTTTTGCCCTGGGCATACTACGTTATCTTCCAAAAGTTCACCAGATCACGCAGTGGCTTCTGGACGCTGGAGCACTTCGTATCATATATAATCATCTTCAAGATTGGAAGGACACAGATTGCCAAAAGAGCAAGTTGGTAGAGAATGCTGTTGGGGCCTTGAGTCAATTCACTGTTTCAACAAACCTAGAGTGGCAAAAGAGTGCTGCTGAAACCGGGGTTATATCTGTTCTAGTGCATTTGCTTGAATGTGGAACCGCATCAACAAAACAGCAAGCGGCATCATCTCTGGCTCAATTTTCAAAGAGTTCACTTGGTCTGAGCAGACCAGCATCCAAGCCCAAGGGCCTTTGGTGCTTCTCAGCTCCAACACAAATTAGCTGCTTGGTTCATGGAGGAATATGTGCTGTCAAGTCATCATTTTGCCTTGTTGAGGCGGATGCAGTGAGGCCATTAGTGAGGACACTCGGGGAATCTGATCCAGGAGCTTCTGAGGCTTCTTTAGATGCACTATTGACATTAGTCGAAGGAGAAAGACTGCAAAGTGGTAGTAAAGTGCTTGAAGAAGCAAATGCCATACCAGTAATAATCCAATGTCTTAATTCCACTTCTCCTGGACTACAAGAGAAGTCTCTACATGCTGTGGAAAGGATTTTTCGGCAAGTGGAGTTCAAGCAGTTGTATGGAGCCTCAGCTCATATGCCTCTAGTTGATTTAACTCAAAGAGGAACTGATCATGTGAGATCTCTGGCAGCTAGAGTTTTGGCACATTTAAACGTGCTTCATTATCAGTCTTCTTATTTCTAA 2988 0.4254 MACPTSEAISHIIDIISELVVCASGVLVKNDSFKELAAYMERIVPILKELKTKKVSDSEAFTNAIDVLNREIRDARQFTQECCQKSKVYLLVNGMSIKKRLQKTMREISRTFDLLPLAMSDLSSNTIEAIGKLCDDMQKAEFKTTVAEEEILEKIESGIQENGVDRCYANNLLIQIAVAVGATTERSALKKELEDFKIEVENCRLRKDEVEAMYMDQIIALLERADAASSPREKELKYLSKRNSLGSQTLEPLQSFYCPITQEVMEDPVETSSGKTFERSAIEKWFAEGNKRCPLTMTPLDTSVLRSNKILKQSIKEWKDRNTMTTIVLTKEKLHSEDDDEVLHCLGNLQDLCEQSELHREWLMLENYIPVLIQILGARKHDVRNRALAILNMLAKDSDDAKERIANIDNAAVSIVHLLGRRAGERKLAVALLLELSKLDLVREEIGKVQGSILLLVAMSGSDDNEAARYAKELLENLSYSDNNVLKMARANYFQPLVHRLSTGPDDVKMIMATALAEMELTNLNKASVFEGGVLDPLLHLVSHSDIQVKTVAIRALRNLSSLKENGLEMIRQGVVRPMLDLLFQAGLLSLSLKEHISAIIMQLAVSTISKDGQAPTLLLESDEDALKLFSLISFTRPDVQQNILQTFYALCQSPSASFIRGKLREWSVFEVLVQLCQEENLNLRASAVKLFAYLVCDEASIPENVNQKCAEAMLQILRSSSDEEEISFALGILRYLPKVHQITQWLLDAGALRIIYNHLQDWKDTDCQKSKLVENAVGALSQFTVSTNLEWQKSAAETGVISVLVHLLECGTASTKQQAASSLAQFSKSSLGLSRPASKPKGLWCFSAPTQISCLVHGGICAVKSSFCLVEADAVRPLVRTLGESDPGASEASLDALLTLVEGERLQSGSKVLEEANAIPVIIQCLNSTSPGLQEKSLHAVERIFRQVEFKQLYGASAHMPLVDLTQRGTDHVRSLAARVLAHLNVLHYQSSYF 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4873g00026 995 SUPERFAMILY ARM repeat 331 985 IPR016024 -
Pral4873g00026 995 Gene3D - 851 991 IPR011989 -
Pral4873g00026 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 329 IPR013083 -
Pral4873g00026 995 Coils Coil 186 213 - -
Pral4873g00026 995 Gene3D - 5 120 IPR036537 GO:0007166
Pral4873g00026 995 SMART arm_5 522 562 IPR000225 GO:0005515
Pral4873g00026 995 SMART arm_5 789 829 IPR000225 GO:0005515
Pral4873g00026 995 SMART arm_5 863 903 IPR000225 GO:0005515
Pral4873g00026 995 SMART arm_5 356 396 IPR000225 GO:0005515
Pral4873g00026 995 SMART arm_5 563 606 IPR000225 GO:0005515
Pral4873g00026 995 SMART arm_5 907 947 IPR000225 GO:0005515
Pral4873g00026 995 SMART arm_5 739 786 IPR000225 GO:0005515
Pral4873g00026 995 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 533 575 IPR000225 GO:0005515
Pral4873g00026 995 Pfam Armadillo/beta-catenin-like repeat 525 562 IPR000225 GO:0005515
Pral4873g00026 995 SUPERFAMILY RING/U-box 242 324 - -
Pral4873g00026 995 CDD RING-Ubox_PUB 256 305 IPR045210 -
Pral4873g00026 995 ProSiteProfiles U-box domain profile. 251 325 IPR003613 GO:0004842|GO:0016567
Pral4873g00026 995 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 995 - -
Pral4873g00026 995 Pfam U-box domain 256 322 IPR003613 GO:0004842|GO:0016567
Pral4873g00026 995 CDD MLKL_NTD 10 120 - -
Pral4873g00026 995 SMART Ubox_2 255 318 IPR003613 GO:0004842|GO:0016567
Pral4873g00026 995 Gene3D - 424 838 IPR011989 -
Pral4873g00026 995 Gene3D - 330 423 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4873g00026 Pral-Chr4873 149786 155356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4873g00026 254 995 U-box Gene Family AT1G20780 29.045 3.82e-67 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4873g00026 - - qsa:O6P43_027410 1293.1